Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq195 237 2e-57 seq20474 136 4e-27 seq14623 132 5e-26 seq34320 123 3e-23 seq19645 113 5e-20 seq7414 113 5e-20 seq28136 111 2e-19 seq25614 98.7 1e-15 seq34564 96.9 4e-15 seq32362 89.7 5e-13 seq2166 82.4 8e-11 >seq195 Length=24554 Score = 237 bits (262), Expect = 2e-57 Identities = 419/604 (69%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 ||||||||| ||| || || | ||||| || || | || | |||| |||||| Sbjct 22693 GAGAACCCCAACCGTTTTGTACTCTTCCCGATTCAGGAGAATGATGTCTGGCAGATGTAC 22752 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGC 116710 || || || ||||| ||||| ||||| | |||||| |||| ||| | |||| | Sbjct 22753 AAGAAAGCTGAGGCCTCGTTTTGGACGGCTGAGGAGCTGGATCTGGTGCACGACATTAAA 22812 Query 116711 GACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 || ||| | | | | ||||||||||| || || |||||||| ||||| ||||| || Sbjct 22813 GATTGGAAAAACCTCACTGACAACGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTT 22872 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 || ||||| || ||||| || || || || |||| | | ||| | || |||||| Sbjct 22873 GCAGCCAGTGATGGCATTGTGAATGAAAACCTGGCCATGAACTTCAGCAACGAAGTGCAG 22932 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 || |||| || ||||| |||||||| |||||||| || || |||||| | |||||||| Sbjct 22933 GTTCCCGAAGCTCGGTGTTTCTACGGTTTTCAGATTGCTATCGAGAACATTCACTCGGAG 22992 Query 116891 ATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGAAGCTCCGTTTG 116947 | |||||| ||||| ||||||||| | | | || | |||||| || |||| Sbjct 22993 GTCTATTCGCTACTCATTGACACGTACATCAAGGACGCT---GTAGAGAAGGACCTTTTG 23049 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| || || || ||||| || || |||| |||| ||||| || ||| Sbjct 23050 CTGCGTGCCATTGACACTATCCCGTGTGTGAAGAAGAAAGCCGCTTGGGCACTCAAGTGG 23109 Query 117008 -ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 | || || | | | | | | || ||||| || | || ||||| | || ||||| Sbjct 23110 TGTGACCCGC-GTGTGTCGTCATACGCAGAGCGTCTTCTTGCGTTCGCCTCAGTGGAGGG 23168 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 ||||||| || ||| ||| | |||| || ||||| |||||||| || |||||||| Sbjct 23169 TATCTTCTTCTCTGGCTCCTTCTGCTCCATCTTCTGGCTGAAGAAACGTGGTCTCATGCC 23228 Query 117127 CGGCCTGA-CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 || || | |||| | || ||||| ||| | || |||||| ||||| |||||||| Sbjct 23229 TGGTCTCAGCTTTTCG-AATGAGCTTATCAGTCGTGATGAGGGTATGCATACCGACTTTG 23287 Query 117186 CCTG 117189 |||| Sbjct 23288 CCTG 23291 >seq20474 Length=655 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || ||||| ||||||||| | || ||||| | Sbjct 555 AAGATGCAAATCTTCGTTAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGAGC 496 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||| || || | ||||| ||||| |||||| ||||| Sbjct 495 TCCGACACAATCGATAATGTAAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGAC 436 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| ||| || || ||||| || || | |||||| | |||||| Sbjct 435 CAGCAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAAGATGGCCGCACCTTGGCTGACTAC 376 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || |||||||||||| ||||||| || || || | || |||||||| || Sbjct 375 AATATCCAGAAGGAGTCCACGCTCCACCTGGTCCTCCGGTTGAGGGGTGG 326 >seq14623 Length=969 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| || || ||||| |||||||| | || ||||| | Sbjct 31 AAGATGCAAATCTTCGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGC 90 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| |||||| | || || || ||||| ||| ||||| Sbjct 91 TCTGACACCATTGACAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCGGAC 150 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || || || || || | || || || |||||||| || | || ||||| ||| ||| Sbjct 151 CAACAGCGTCTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTAC 210 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||||| ||||||||||||| || | || ||||||| ||| Sbjct 211 AATATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGGC 261 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| ||||| || || || |||||| | || || || | | Sbjct 490 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCG 549 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || || | |||||||||||||| ||| | |||||| Sbjct 550 GATACTATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAG 609 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| || || || ||||| || || | | ||||| ||| |||||| Sbjct 610 CAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAAC 669 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| |||| || || | || ||||||| ||| Sbjct 670 ATCCAGAAAGAATCCACCTTGCACCTGGTCCTCCGTCTGAGGGGTGGC 717 >seq34320 Length=242 Score = 123 bits (136), Expect = 3e-23 Identities = 144/192 (75%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||| ||||| |||||||| |||| ||||| | Sbjct 191 AAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAGGTCGAGAGC 132 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| |||||| || || | ||||| || |||||||| |||| Sbjct 131 TCCGACACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCGGA 73 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| ||| ||||| ||||| || || | || ||| | |||||| Sbjct 72 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGTACCTTGGCCGACTA 13 Query 40866 CAACATCCAGAA 40877 |||||||||||| Sbjct 12 CAACATCCAGAA 1 >seq19645 Length=690 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || |||||||| |||| || || | || Sbjct 120 ATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACGCTCGAGGTGGAGAGCTCC 179 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||||| || || | ||||| || ||||| ||| ||||||| Sbjct 180 GACACGATTGACAATG-TCAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCA 238 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| || || ||||| || || | ||||| ||| ||||| || Sbjct 239 GCAGAGGCTGATATTCGCCGGGAAGCAGCTCGAGGATGGCCGCACACTCGCGGACTATAA 298 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || || || ||| | | ||||||| ||| Sbjct 299 CATCCAGAAGGAGTCGACCCTCCACCTCGTGCTCAGGCTGAGGGGAGGC 347 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || ||||| ||| |||| || || | || Sbjct 348 ATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACCATAACCCTCGAGGTGGAGAGCTCC 407 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| ||| || | ||||| ||||| || || ||||||| Sbjct 408 GACACGATCGATAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGACCA 466 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || ||||| || || | ||||| || |||||||| Sbjct 467 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACGCTTGCGGACTACAA 526 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||||| | || || || || ||| Sbjct 527 CATCCAGAAGGAGTCGACCCTTCACCTTGTG 557 >seq7414 Length=1926 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || ||| | |||||||| || ||||| | |||||||| | Sbjct 227 AAGATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCACTCTTGACGTCGAGTCG 168 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | | |||| | ||| || |||| ||||| || ||||| || | || Sbjct 167 TCGGACTCGATCGACAACG-TGAAGACGAAGATTCAGGACAAGGAAGGCATTCCTCCTGA 109 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | || | ||| ||||| |||||||| || | ||||| | | |||||| Sbjct 108 CCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGTTGAGCGACTA 49 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||| ||||||||| | |||||||| || ||| Sbjct 48 CAACATTCAGAAGGAGTCGACGCTGCACCTTGTG 15 >seq28136 Length=407 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || |||||||| || || |||||||| ||||| ||| | || || ||| | Sbjct 9 AAGATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGC 68 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | | |||| ||||| | |||||||| || ||||| | ||| Sbjct 69 AGCGATACAATCGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATCCCGCCCGAC 128 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||||| || || | |||||||| ||| |||| || | ||||| || || ||| Sbjct 129 CAGCAACGTCTGATATTTGCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTAC 188 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| ||||| ||| | || |||| || ||| || Sbjct 189 AACATTCAGAAAGAGTCAACCTTGCACCTTGTGCTG 224 >seq25614 Length=477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 ||||| || || |||||||| |||| ||||| | | |||| | | | | | || Sbjct 477 CTCACCGGTAAGACCATCACTCTCGAAGTCGAGAGCTCTGACACCATTGACAATGTTAAA 418 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || || | ||||| || || |||||| | |||||||| || || |||| ||| || Sbjct 417 GCTAAGATCCAGGACAAGGAAGGGATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGA 358 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || |||| || ||||| ||| |||||||||||||| || | || || Sbjct 357 AAGCAGCTTGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAAGAATCTACCCTC 298 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || || || | || |||||||| ||| Sbjct 297 CACCTTGTTCTCCGTTTGAGGGGTGGC 271 >seq34564 Length=234 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| |||| || || | | Sbjct 54 ATGCAGATCTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTCGAGGTGGAGAGCTCG 113 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 114 GACACCATCGATAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 172 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||||| || ||||| || |||| | | ||||| |||||||| Sbjct 173 GCAGAGGCTTATCTTTGCGGGTAAGCAGCTCGAGGACGGGAGGACCCTTGCGGACTACAA 232 Query 40869 CA 40870 || Sbjct 233 CA 234 >seq32362 Length=298 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || || ||| | || ||||| || ||||| | || || || | || Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 65 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | || | ||||||| ||||| || || || || | || || Sbjct 66 GATACGATTGATAACG-TAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCACCTGATCA 124 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||| | || || ||||||||||| || | ||| || || ||| || || Sbjct 125 GCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAA 184 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || || ||||| Sbjct 185 CATCCAGAAGGAATCTACACTTCACCTTGTCTTGCG 220 >seq2166 Length=5462 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | ||||| || | || Sbjct 963 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGTTGGACGTGGAGCCGTCC 904 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| || | | | ||||| | ||||| | || || || || || || | |||||| Sbjct 903 GACTGCATTGACAATGTCAAGCAGAAAATCCAGGAAAAGGAAGGTATTCCGCCTGACCAG 844 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || ||||| ||||| || || | || || || ||||||||| Sbjct 843 CAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGATGGCCGAACGCTTTCGGACTACAAC 784 Query 40870 ATCCAGAA 40877 |||||||| Sbjct 783 ATCCAGAA 776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514990320310640