Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq2111 100 2e-16 >seq2111 Length=5547 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| || || ||| ||||| || || || ||||| || ||||| ||||| || | Sbjct 3429 TCAATATGGTTGTTATAGATGTGCGCGTCACCAAAAGTATGGATAAAATCTCCCGGTTTT 3370 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 ||||| || || || ||||| | || |||| | ||| || |||||||||||| Sbjct 3369 AAATCGCAAACCTGAGCAATCATCAATGTCAATAATGCATAAGATGCTATGTTAAAAGGC 3310 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || |||| ||||| || ||||||||||||||| ||||| | || ||||| Sbjct 3309 ACTCCTAAAAAGATATCGGCGCTTCTTTGATATAACTGGCAGGATAATTTGCCATCTGCT 3250 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTT 97275 |||||||||||| || | || ||||| || | || | |||| Sbjct 3249 ACATAAAACTGAAAAAAGGCGTGGCAGGGTGGAAGTGCTACTTTT 3205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346633796904230