Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq32362 132 7e-26 seq25614 98.7 1e-15 seq14623 95.1 2e-14 >seq32362 Length=298 Score = 132 bits (146), Expect = 7e-26 Identities = 175/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| |||||| | ||||| | |||||||| ||||| || | ||| |||| ||| Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 65 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| ||||||||| || || ||||| || ||||||||||| Sbjct 66 -GATACGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCACCTGATCA 124 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || ||||| | |||||| | ||||| | | |||||||| Sbjct 125 GCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAA 184 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT-GGTATTAAAAAT 124775 || || || ||||| || | || | || || ||| | || ||| ||| || ||||| Sbjct 185 CATCCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGGGTGTTGAAAAT 243 >seq25614 Length=477 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| |||| |||||||| || || || || || | || |||| ||| Sbjct 270 ATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCG 211 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || || || || || ||||| || || ||||| || Sbjct 210 -GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 152 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| || || || || || | |||||| | | || || | ||||| || Sbjct 151 GCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAA 92 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| ||||| || |||||||||| | ||| || |||| || || Sbjct 91 TATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGGCAT 41 >seq14623 Length=969 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || || || || || || ||||| | || |||| ||| Sbjct 262 ATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACGATAACGTTGGAAGTTGAGAGCTCG 321 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || || || || || ||||| || || ||||| || Sbjct 322 -GATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCA 380 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| ||||| || | || || | ||||| | | ||| || || Sbjct 381 GCAACGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCAGACTACAA 440 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| |||||||| ||||| | || | ||||| | |||||||| Sbjct 441 TATTCAAAAGGAATCAACCCTGCATCTCGTCCTCCGTTTGAGGGGTGGTAT 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755120398115200