Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14623 118 9e-22 seq7414 118 9e-22 seq20474 116 3e-21 seq19645 116 3e-21 seq34320 114 1e-20 seq34564 111 1e-19 seq451 111 1e-19 seq25614 109 5e-19 seq28136 107 2e-18 seq31347 84.2 2e-11 >seq14623 Length=969 Score = 118 bits (130), Expect = 9e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| ||||| ||||| ||||| || | || || ||| ||||||||||||||| Sbjct 914 GTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCTTCGAGCTGTTTTCCA 855 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTT 118660 || |||| || |||||||| || || || ||||| ||||||| |||| || || || Sbjct 854 GCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGT-ATCTTAGCCTT 796 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | |||| |||||||| |||||| || || | || | || || || || || || Sbjct 795 CACATTGTCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTCTTACCTGTTAGGGT 736 Query 118721 TTTTACAAAAATCTGCATG 118739 ||| ||||| ||||||||| Sbjct 735 TTTGACAAAGATCTGCATG 717 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || || ||||| || |||||||||||| | || | ||||||| Sbjct 698 ACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCCTCG 639 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| | ||||||||| || || || |||||||| ||||| Sbjct 638 AGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGG 579 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | || |||| |||||| || || | ||| | ||| || Sbjct 578 ATCTTGGCCTTGACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCGTCTTT 519 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||||||||| Sbjct 518 CCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq7414 Length=1926 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || ||||||||||| ||||||| ||||| |||||| Sbjct 15 CACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTC 74 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| | || | ||||||||| || ||||| ||||| |||||||| Sbjct 75 CAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 134 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| | ||||| |||||| || | || | ||| || Sbjct 135 AATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTT 194 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || ||||||||||| Sbjct 195 GCCCGTCAACGTCTTCACGAAAATCTGCAT 224 >seq20474 Length=655 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || |||||||| || ||| || ||||| ||| |||||||| Sbjct 121 GTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCTTCGAGCTG 180 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| ||||||| | |||||| || || || || |||||||||||| || || Sbjct 181 CTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTT 240 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||||| | || | || || | |||||| ||||||| || | || || || || Sbjct 241 GGCCTTAACATTGTCAATTGTATCGGAGCTCTCTACCTCGAGAGTGATTGTCTTACCAGT 300 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| Sbjct 301 GAGGGTCTTCACAAAAATCTGCAT 324 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || || ||||| || || ||||| ||| || Sbjct 344 ACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGTGCGGCCATCTTCA 403 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| ||||||| | |||||| || || || || ||||||||||| Sbjct 404 AGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGG 463 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | |||||||||||| | ||| | || ||| Sbjct 464 ATCTTGGACTTTACATTATCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTG 523 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || ||||| Sbjct 524 CCGGTAAGGGTCTTAACGAAGATTTGCAT 552 >seq19645 Length=690 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || ||||| || || |||||||| || | ||||| |||||| Sbjct 557 CACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCATCCTC 498 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| || | |||||| || ||||| || ||||||||||| Sbjct 497 GAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTG 438 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| ||||| | |||||| ||||||| ||| | || || Sbjct 437 GATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTATGGTCTT 378 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||||||| || || || || ||||||||| || Sbjct 377 CCCGGTCAGCGTCTTCACGAAGATCTGCATGCCT 344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || ||||| || || | ||||| |||||| Sbjct 329 CACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCATCCTC 270 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| | || || | |||||| || || || ||||| |||||||| Sbjct 269 GAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTG 210 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||| | |||||| ||||||| || | || || Sbjct 209 GATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTCTT 150 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 149 CCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 >seq34320 Length=242 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || |||||||| ||| || || || |||||||||||| || |||||| |||| Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 || | |||||| || || || ||||| |||||||| || || || || | ||| Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 120 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 | |||||| | |||||||||||||| || | || |||||||| || || || || || Sbjct 121 ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAG 180 Query 118731 ATCTGCAT 118738 |||||||| Sbjct 181 ATCTGCAT 188 >seq34564 Length=234 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || || |||| || | |||||| || ||||| |||||||||||| Sbjct 208 TCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTG 149 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||||| |||||| ||||||| ||| | Sbjct 148 TCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCCGAGCTCTCCACCTCGAGGGTGATG 89 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || || || ||||| ||||||||| Sbjct 88 GTCTTCCCGGTGAGGGTCTTGACAAAGATCTGCATG 53 >seq451 Length=16219 Score = 111 bits (122), Expect = 1e-19 Identities = 266/399 (67%), Gaps = 4/399 (1%) Strand=Plus/Plus Query 133010 ATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACA 133069 ||| |||||||||||||| ||| ||| |||| || || | ||||| | | | Sbjct 7720 ATTGAGCGATTGACTCTGGCAAATGTAAGCGCCACGATCAGCCGACATGTCCAAGACCGA 7779 Query 133070 CTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTC 133129 |||| ||||| ||||| | |||||| | | ||||| ||| | ||| || | Sbjct 7780 CTTTTGCTTGATTTCCCACACGGTCTTGTACTTTTCCTTGATATGGTCTGGAATGGTCTT 7839 Query 133130 AATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGTAAAT 133189 | || ||||| || || ||| ||| || | || || | ||| || || | || Sbjct 7840 GACCTTTTGCACCGATCCACCGTCGTTCAAGATTTGATTACGGACTTCAGGCGTCCAGAT 7899 Query 133190 GTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAG 133249 | | | ||| || ||| | || | |||| || |||||| | |||||| || ||||| Sbjct 7900 GCCCAAATCAATCAGCTCCTTCATCAGATGCTTGTTGACGATCGTAAACTCACCAGCGAG 7959 Query 133250 AACGCGTCTGAGATATACA--TTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGT 133307 ||||| | || | |||| || || ||| |||| |||| ||||| |||||||| || Sbjct 7960 TACGCGAC-GA-TTGTACATGTTTGATGTGTACGGCTCGATGGATTCATTGTTGCCCAGG 8017 Query 133308 ATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTAC 133367 ||||| || || | || || ||||| ||||| | ||||||||| | | |||| | Sbjct 8018 ATCTGGGCAGTTGAAGCAGTTGGCATAGGAGCCACTAGCAAAGAGTTACGAATACCGTGC 8077 Query 133368 TTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGA 133406 ||| | | || || ||| || |||||||||| ||| Sbjct 8078 TTGATCACATTCTCCTTCAAGGCGGTCCAGTCCCAAAGA 8116 >seq25614 Length=477 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||||| ||||| || |||||||||||| | || || ||||| ||||| Sbjct 295 GTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGCTG 354 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||| ||| |||| ||||||||||| ||||| || || || |||||||| || || Sbjct 355 CTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGATCTT 414 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 |||||| | || | |||||| | ||||||||| |||| || | || || ||||| Sbjct 415 AGCTTTAACATTGTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTGATGGTCTTACCGGT 474 Query 118715 CAG 118717 || Sbjct 475 GAG 477 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || || || |||||||| |||||||| || || | |||||| Sbjct 61 CACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCCTC 120 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| || | |||||| || || || || || |||||||| Sbjct 121 CAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 180 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||||| |||||| || || | || | || || Sbjct 181 GATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGTCTT 240 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||||||||| || |||||| Sbjct 241 TCCAGTTAGTGTTTTTACAAAGATTTGCATG 271 >seq28136 Length=407 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | |||| ||| | ||| | || |||||||| |||||||||||||| Sbjct 240 TACCCCCACGAAGCCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCG 181 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || |||||| ||| || | ||| || || || | || ||||| ||||| ||||| | Sbjct 180 CCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCG 121 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || ||||| ||||| || || | |||| || || |||| || | Sbjct 120 GGATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCAA 61 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | || ||||| ||||| || ||||| || |||||||| Sbjct 60 CTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 12 >seq31347 Length=324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || || || || |||||||||||||| | |||||| ||||||||||| Sbjct 209 GTGGAGGGTCGATTCCTTCTGAATGTTGTAATCCGCAAGGGTGCGCCCGTCCTCGAGCTG 268 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||| |||| || | |||||| || || || || ||||||||||| Sbjct 269 CTTCCCAGCGAAGATAAGCCTCTGCTGGTCCGGCGGGATCCCCTCCTTGTC 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433642494360988