Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq25614 136 5e-27 seq20474 105 8e-18 seq14623 96.9 4e-15 seq2166 96.9 4e-15 seq34564 91.5 2e-13 seq7414 86.0 7e-12 >seq25614 Length=477 Score = 136 bits (150), Expect = 5e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||||| ||| | ||||||||||| || |||||||||||||||||||||||| Sbjct 44 CCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 103 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | |||| | || || ||||||||||||||||| || || | ||||||||| | || Sbjct 104 AAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 163 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| || |||| ||| | | | ||||| |||| || Sbjct 164 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCCGAGCTC---TC 219 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || || || || || ||||| || ||||||||||||||||| Sbjct 220 AACTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 >seq20474 Length=655 Score = 105 bits (116), Expect = 8e-18 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| ||||||| || || | || || ||||||||||||||||| Sbjct 361 CTCCTTCTGGATATTGTAGTCAGCCAAGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAA 420 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| | ||||||||| | || | | |||||||||| ||| || || | | Sbjct 421 GATGAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTTACATT 480 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||||| |||| || || || | |||||||| ||||| || || ||||| Sbjct 481 ATCGATTGTGTCGGAGCTC---TCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTT 537 Query 43169 TACAAAGATTTGCATTTT 43186 || ||||||||||| || Sbjct 538 AACGAAGATTTGCATCTT 555 >seq14623 Length=969 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | || | ||||| ||| ||||| || ||||||||||| || Sbjct 260 CCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCA 201 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| ||||| ||||| || ||||| ||||| | || Sbjct 200 AGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGA 141 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || ||||| ||| ||||||| || | | | | ||||| |||| || Sbjct 140 ATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTC---TCG 84 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || | |||||||| ||||| || || || || || ||||||||||| || Sbjct 83 ACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || ||||| | || | ||||| || ||||||||||||||||| || ||| Sbjct 488 CCACCCCTCAAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCC 429 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| || || ||||| || || |||||||| | ||| Sbjct 428 AGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGG 369 Query 43077 ACGCTCTCCTTGTCCATGATTTT 43099 | | ||||||||| ||| || Sbjct 368 ATTCCTTCCTTGTCCTGGATCTT 346 >seq2166 Length=5462 Score = 96.9 bits (106), Expect = 4e-15 Identities = 139/192 (72%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 42994 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | || || || | || || |||||||| || || || Sbjct 773 CCTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAA 832 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | ||| | | ||||| ||| |||||| || |||| | | Sbjct 833 ATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGA-CATT 891 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | |||| || ||||| || | ||||||||| ||||| || || ||||| || Sbjct 892 GTCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCAC 951 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 952 AAAGATCTGCAT 963 >seq34564 Length=234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 43005 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 43064 ||||| || || || |||| | |||| || ||||||||||| || || || || | |||| Sbjct 232 TTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGC 173 Query 43065 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC- 43123 ||||| | || | || |||||||||| ||| || || | | | | ||||| Sbjct 172 TGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCC 113 Query 43124 --GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGC 43181 |||| ||||| |||| |||||||| || || || || ||||| |||||||| ||| Sbjct 112 GAGCTC---TCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGC 56 Query 43182 AT 43183 || Sbjct 55 AT 54 >seq7414 Length=1926 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || || || || | || || |||||||| || ||||| Sbjct 33 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 92 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || ||||||||| ||| | || || | ||| Sbjct 93 AATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC-TGAATCTTCGTCTTCACGT 151 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||| ||| || || || | ||||| || |||||||| | |||||| | Sbjct 152 TGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTCAACGTCTTCA 211 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 212 CGAAAATCTGCATCTT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571563577178920