Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq1150 210 8e-50 seq2464 104 8e-18 seq4487 100 1e-16 seq7683 95.1 4e-15 seq15098 87.8 6e-13 seq15573 84.2 8e-12 seq9150 84.2 8e-12 >seq1150 Length=8598 Score = 210 bits (232), Expect = 8e-50 Identities = 330/467 (71%), Gaps = 9/467 (2%) Strand=Plus/Minus Query 3707 ATCACCATCTACGAGCCGATTGGCTACGACTGGTGGACCGGTGAAGGTGTCACGGCAAAA 3766 |||| |||||| || ||| || ||||||| |||| ||| || || ||||| | || Sbjct 2496 ATCAGCATCTATGACGTGATCGGTTACGACTACTGGAGCGGCGAGGGCGTCACCACCAAG 2437 Query 3767 CGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATGTCGATGTGACCGTGAACATCAAC 3826 || | || | || || ||| | | ||||| | | || ||||| || ||| ||||| Sbjct 2436 CGTGTGGCCGCTGCACTACGCACGCTGGGCAAGGG-GCCG--GTGACGGTCAACGTCAAC 2380 Query 3827 AGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTGCGCGAGCACAAG 3886 ||| ||||||||| | ||||| |||||| | || |||||| ||||| |||||| | Sbjct 2379 TCCCCAGGCGGCGACATGTTCGAGGGCCTGTCGATCTACAACACCCTGCGTGAGCACGAC 2320 Query 3887 GGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATCGCCATG 3946 ||| |||||||| | || | | |||||||||||||| || || || ||||||||||| Sbjct 2319 GGCGAGGTCACGATCAAGGTGCTGGGCCTGGCTGCCTCGGCGGCTTCCATCATCGCCATG 2260 Query 3947 GCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCATAACGCCTGGCTG 4006 ||||| || | | |||| || || | |||||| |||||||| ||||| ||| || Sbjct 2259 GCGGGCGACACCGTGCAGATCGCACGGGCGGGCTTCCTCATGATCCACAACGCGTGGGTG 2200 Query 4007 ATCGCCATGGGTAATCGGAATGATCTCCGTGAGATAGCCGATTGGCTGGAGCCATTCGAC 4066 | | | |||||||| | || || || ||||| |||| ||||||||||| |||||| Sbjct 2199 GTGGTCGCCGGTAATCGCATCGACCTGCGCGAGATCTCCGACTGGCTGGAGCCGTTCGAC 2140 Query 4067 ATGACGCTGGCTGACATTTACGCACAGCGC-ACGGAA--ATCGACATCGACGACATCGTG 4123 | |||| ||||| |||| |||| ||| | | ||| | | || || Sbjct 2139 CGCTCCATGGCCGACATCTACGTGGCGCGCTCCGGCATGAGCGAGA---AGGAAGCCGCC 2083 Query 4124 AAACAGATGGACGCCGAGACCTGGATCGGCGGGCGCGAAGCCGTCGA 4170 | ||||||||||||| ||||||||||||| |||| ||| |||| Sbjct 2082 CGCCTGATGGACGCCGAGTCCTGGATCGGCGGCAGCGATGCCATCGA 2036 Score = 113 bits (124), Expect = 2e-20 Identities = 457/710 (64%), Gaps = 29/710 (4%) Strand=Plus/Minus Query 4930 GAGTACGTCCGCGAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTCGGAA-----GGC- 4983 |||| ||| ||||| || |||||| |||||| || || || || | || ||| Sbjct 1116 GAGTTCGTGCGCGAAACGGGCTTCACCAACAACGCTGCCCCCGTGGCTGAGAATCCGGCC 1057 Query 4984 -ACCCAGAAGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCGCACCAT 5042 | || |||||| | ||| | || ||||| | || | |||| | || |||||||| Sbjct 1056 GATCC-GAAGCCCGAAAGCGATATCACGTTCGAGCCCGACAGCGCGGCCGTGCGCACCAT 998 Query 5043 CGCACACCTGTTCAAGGC----AAGTCGCCAGATCCTGGACGACGCTTCGGCCTTGCAGA 5098 ||| ||| | || || ||| ||||||||||| || | || ||||| Sbjct 997 CGCCCACTTCATCCGCGCCTCCAAG----CAGATCCTGGAAGATGTGCCGCAGCTGCAGG 942 Query 5099 GCTACATCGATGCGCGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAATGTCAACTGCTC 5157 |||| |||| | || ||| | |||||||||| | || |||||| || ||||| Sbjct 941 CCTACGTCGACGGCCG-GCTGCTCTACGGCCTGAAGGTGAAGGAAGAAGCCCAGCTGCTG 883 Query 5158 TACGGGAACGGGACCGGCGC-CAATCTGCACGGCATCATTCCGCAGGCACAGGCCTACGC 5216 |||| | | || || | ||| || ||||||||| | ||||| || || || Sbjct 882 AACGG-ATCTGGCGTGGGTCTCAACCTCAACGGCATCAACACCCAGGCCACTGCGTATGC 824 Query 5217 GCCGCCGAGTGGCGTAGTGGTAACCGCCGAGCAGCGAATCGACCGCATCCGCCTGGCGAT 5276 ||| | | | ||||| || ||| || | |||||| | ||| | || || Sbjct 823 AAACCCGGGCGTCACGGTGGT---CGATGAGACGCCGGTGGACCGCCTGCGCATCGCCAT 767 Query 5277 CCTTCAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGTATCGTGCTCAACCCCATCGACTG 5336 || |||| ||| |||||||||| | | || || |||||||| || ||||||||||| Sbjct 766 GCTGCAGGTGCAGCTGGCCGAGTACGCAGCAGATGGCATCGTGCTGAATCCCATCGACTG 707 Query 5337 GGCGCTGATCGAGCTGAACAAGGACGCCGAGAACCGTTACATCATCGGCAGCCCGCAGAA 5396 ||| |||||| ||| |||||| || | | | ||| | ||| || ||| || Sbjct 706 GGCCGAGATCGAACTGCTCAAGGAAACCACGGGCGGCTACCTGTTCGCCAACCCCCAAGG 647 Query 5397 CGGCACCACTCCGACCCTCTGGCGTCTGCCGGTGGTGGAAACCCAGGCCATCACTCAGGA 5456 || |||| ||| ||| ||| | | |||||||| | ||| ||||||| | | Sbjct 646 CGTGACCAGTCCCGTCCTGTGGGGCCGCCCGGTGGTCGCGACCACGGCCATCGCCACCGG 587 Query 5457 CGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCCCAGATCTTCGACCGCATGGACATCGA 5516 | | ||||||||||| | ||| | || ||| | || |||||| ||| | | Sbjct 586 CAACTTCCTGACCGGCTCCTTCCGCATGGGTGCCATGGGCTGGGACCGCGAAGACGCCAA 527 Query 5517 GGTTCTGGTTTCCACCGAGAAC---GACAAGGACTTCGAGAACAACATGGTCACCATCCG 5573 | || || | || || |||| |||||| ||| |||||||| || |||| Sbjct 526 CATCGCCGTGAGCAACCAGGACCGTGACA---ACTTCGTGAAGAACATGGTGACGATCCT 470 Query 5574 CGCTGAGGAGCGGCTGGCCTTCGCGGTCTATCGCCCCGAGGCTTTCGTGA 5623 | || ||||| | ||| || | || | |||||||| || ||||||| Sbjct 469 CTGCGAAGAGCGCATCGCCCTCACCGTGTTCCGCCCCGAAGCGTTCGTGA 420 Score = 87.8 bits (96), Expect = 6e-13 Identities = 195/292 (67%), Gaps = 3/292 (1%) Strand=Plus/Minus Query 3122 GAGATTTGCAGATGGTTCGGGGTGCCGCCCTGGATGATCGGCCAGACCGACAAGGG---G 3178 ||||| ||| |||||||| | ||||||||||||||| ||||||| ||| | |||| Sbjct 3099 GAGATCTGCCGATGGTTCCGCGTGCCGCCCTGGATGGTCGGCCACTCCGCCCAGGGCGCC 3040 Query 3179 AGCAACTGGGGGACAGGGCTTGAACAGCAGATGCTCGCGTTCCTGACATTCTCGATCAGC 3238 | || ||||| | ||| | || ||| | ||| ||| |||||||| ||| || | ||| Sbjct 3039 ACGAAGTGGGGCAGCGGGATGGAGCAGGAAATGATCGGCTTCCTGACCTTCACGCTGAGC 2980 Query 3239 TCGATCACCAATCAGATTCAGCAGTGCGTCAACAAGCGGCTGCTAACTGCGCCCGAGCGG 3298 | ||| | ||| ||||| | |||||||| ||||| || || |||| || Sbjct 2979 ACCTGGCTCAAGCGCATTGAGCAGGCCATCAACAAGGATCTGCTCACGCCGGCCGACCGC 2920 Query 3299 ATTCGCTATTACGCCGAGTTCTCACTTGAGGGGTTCCTGAAGGCTGATAGCGCTGGTCGC 3358 | | || |||||| | ||| | || || | ||| |||| ||| | | || Sbjct 2919 ACCAGGTACTACGCCAAATTCAGCGTGGAAGGCCTGCTGCGCTCTGACAGCACGGCCCGG 2860 Query 3359 GCTGCCTGGTACAGCACTATGGCGCAAAACGGTTTCATGACCCGCAACGAAG 3410 || || | ||| | | ||| | | ||| ||||||||||| |||||| Sbjct 2859 GCCGCGTTCTACGGAGCGCTGGTGGACCGCGGGATCATGACCCGCGACGAAG 2808 >seq2464 Length=4980 Score = 104 bits (114), Expect = 8e-18 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCG-- 48971 ||||| || |||||| |||| | ||||||||| | | || | |||||||||||| Sbjct 4337 TGAAGATGCTGGCCAAGGAGTTGCAGTGCCCGGTGATTGCCCTGTCCCAGCTCAACCGTT 4396 Query 48972 CGGATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGC 49031 ||| || ||| ||| | || |||||||| || | |||||| ||||| || || || Sbjct 4397 CGG-TG-GAGCAGCGCACCGACAAGCGCCCCATGATGTCCGACCTGCGCGAATCGGGTGC 4454 Query 49032 CATCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGA 49076 ||||||||| || || |||||| | |||||| | ||||||||||| Sbjct 4455 CATCGAGCAGGATGCCGACATCATCATGTTCATCTACCGCGATGA 4499 >seq4487 Length=2993 Score = 100 bits (110), Expect = 1e-16 Identities = 119/156 (76%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 48923 TGGCCAGGGAGATCGGATGC-CCGGTGCTCCCGCTCTGCCAGCTCAACCGCG-GATGTGA 48980 |||||| ||| || | ||| |||||| || |||| | |||||||||||| | || || Sbjct 460 TGGCCAAGGA-ATTGAATGTGCCGGTGATCGCGCTGTCACAGCTCAACCGCTCGCTG-GA 403 Query 48981 GTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCA 49040 | || | || |||||||||||| | |||||| |||||||| ||||| |||||||| Sbjct 402 AACGCGTACCGACAAGCGCCCGGTGATGGCCGACCTTCGCGAGTCGGGCGCAATCGAGCA 343 Query 49041 AGACGCGGACATCGTGATGTTCGTGTACCGCGATGA 49076 ||||||||||| | ||||| | |||||||| || Sbjct 342 GGACGCGGACATGATCGTGTTCATCTACCGCGACGA 307 >seq7683 Length=1870 Score = 95.1 bits (104), Expect = 4e-15 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 48914 TGAAGCTGTTGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCG 48973 ||||| || |||||| ||| | ||||||||| || |||| | |||||||||||| Sbjct 1502 TGAAGATGCTGGCCAAGGAACTGCAGTGCCCGGTGATCGCGCTGTCGCAGCTCAACCGCT 1561 Query 48974 -GATGTGAGTCTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCC 49032 | || || ||| | || ||||| || || | ||| || ||||| || |||||| Sbjct 1562 CGGTG-GAACAGCGCACCGACAAGCGGCCCATGATGTCCGATCTGCGCGAATCGGGCGCC 1620 Query 49033 ATCGAGCAAGACGCGGACATCGTGATGTTCGTGTACCGCGATGA 49076 |||||||| || ||||||||| | |||||| | |||||||| || Sbjct 1621 ATCGAGCAGGATGCGGACATCATCATGTTCATCTACCGCGACGA 1664 >seq15098 Length=937 Score = 87.8 bits (96), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 54145 AAGCCGGTATGGCGCAACAGGGAGCGCTGCTGATTTGTAATCAGAGGGTTGCGGGTTCGA 54204 |||||||||| || || | || || || |||| |||||||||| ||| ||||||||| Sbjct 789 AAGCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGA 848 Query 54205 CTCCTGCTGCCGGCACCATAC--TACAAGGCC 54234 |||||| |||||||||||||| |||||||| Sbjct 849 CTCCTGGTGCCGGCACCATACAACACAAGGCC 880 >seq15573 Length=905 Score = 84.2 bits (92), Expect = 8e-12 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 48940 TGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGTCTCGCCCGGATAAGCGC 48999 |||||||| | | || | ||||| |||||| | ||| |||||| | || ||| Sbjct 481 TGCCCGGTCATTGCCCTTTCGCAGCTGAACCGCTCGTTGGAGCAGCGCCCGAACAAACGC 422 Query 49000 CCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAGACGCGGACATCGTGATG 49059 |||||| | |||| | || || || || || |||||||| ||||| ||| | | ||| Sbjct 421 CCGGTGAACTCCGACTTGCGTGAATCTGGTGCAATCGAGCAGGACGCCGACGTGATCATG 362 Query 49060 TTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGAAGGGCATCGGCGAAATC 49119 |||||||||||||| || || || ||| | | ||| | |||||| | | |||||| Sbjct 361 TTCGTGTACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAGGGCGTGGCGGAAATC 302 Query 49120 CTGATC 49125 | ||| Sbjct 301 ATCATC 296 >seq9150 Length=1571 Score = 84.2 bits (92), Expect = 8e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48943 CCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGTCTCGCCCGGATAAGCGCCCG 49002 ||||| || |||| | |||||||||||| ||| | || | || ||||||||| Sbjct 454 CCGGTCATCGCGCTGTCGCAGCTCAACCGCTCGCTTGAAACGCGTACCGACAAGCGCCCG 513 Query 49003 GTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAGACGCGGACATCGTGATGTTC 49062 ||| | |||||| ||||| || |||||||||||||| ||||| ||||| | | ||| Sbjct 514 GTGATGGCCGACCTTCGCGAATCGGGCGCCATCGAGCAGGACGCCGACATGATCGTCTTC 573 Query 49063 GTGTACCGCGATGA 49076 | |||||||| || Sbjct 574 ATCTACCGCGACGA 587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180365449020984