Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2166 127 1e-24 seq7414 118 7e-22 seq28136 107 1e-18 seq34320 105 4e-18 seq19645 104 2e-17 seq25614 87.8 1e-12 seq14623 86.0 4e-12 >seq2166 Length=5462 Score = 127 bits (140), Expect = 1e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 ||||||| ||||||||||| || ||| ||| | || || | ||||||||| || |||| Sbjct 774 CTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAA 833 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 | || ||||||||||| || | | ||||| || || || ||||| | || | Sbjct 834 TCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTGT 893 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | || | |||| || || ||||||| ||||||||| |||||||| || || ||||||| Sbjct 894 CAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACAA 953 Query 34380 AGATCTGCAT 34389 |||||||||| Sbjct 954 AGATCTGCAT 963 >seq7414 Length=1926 Score = 118 bits (130), Expect = 7e-22 Identities = 161/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 34166 CCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGC 34225 |||||||| | ||||| ||||| | || || ||||| |||||||||||| || | Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 34226 TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACG 34285 ||| | || |||| ||||||||| |||||||| | ||||||||||| || | | Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 34286 CTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCC 34345 | |||||||| ||||| ||| | | | | ||||| || | ||| |||||||| Sbjct 121 CCTTCCTTGTCCTGAATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCA 180 Query 34346 ACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | ||||| || ||||| || | || ||||| || ||||||||| Sbjct 181 AGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATC 225 >seq28136 Length=407 Score = 107 bits (118), Expect = 1e-18 Identities = 170/238 (71%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||||||| ||||| || || |||||||| |||||||| || | | Sbjct 238 CCCCCACGAAGCCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCC 179 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGA-CGGG 34281 || || | || |||||||||||||| || || || || || ||||||||| |||| Sbjct 178 AGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGG 119 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | || || ||||| || ||||| ||| | || | | || | |||| | ||| Sbjct 118 ATCCCT-TCTTTGTC--CTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCA 62 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC--GCTCG 34395 || || | || ||||| ||||| || || || || || |||||||||||| ||||| Sbjct 61 ACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTTGCTCG 4 >seq34320 Length=242 Score = 105 bits (116), Expect = 4e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| ||||||||||||| || |||| | || || | ||||||||| ||||| || Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 34262 AGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGC 34320 |||| |||||||| || |||| | || |||||||| ||||| ||| | | | | Sbjct 61 AGCCTCTGCTGGTCCGGCGGG-ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTC 119 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | |||| ||||| || | |||||||| ||||||||||| || || || || Sbjct 120 GATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAA 179 Query 34381 GATCTGCATC 34390 |||||||||| Sbjct 180 GATCTGCATC 189 >seq19645 Length=690 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || | |||||| ||||| ||||| | || || ||||| ||||| ||||| | Sbjct 346 CCTCCCCTCAGCCTGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCG 287 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || |||| ||||||||| ||| Sbjct 286 AGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGA 227 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | || | | |||| |||| || || Sbjct 226 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACC 167 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| || ||||| || || ||||| ||||||||||| Sbjct 166 TCGAGCGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | ||||| ||||| | || || ||||| ||||||||||| Sbjct 578 GAACCCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTC 519 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | ||| ||| | || || | |||||| || || || || |||| ||||||||| Sbjct 518 CGCAAGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGG 459 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 || | | ||||||||| |||||| ||| | | | |||| |||| || Sbjct 458 AGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTC 399 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | || ||||| || ||||| || || ||||| ||||||||||| Sbjct 398 CACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 348 >seq25614 Length=477 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||||||||| |||||||| |||| || ||| |||| Sbjct 287 AGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCGTCC 346 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| |||||||| || || |||||||||||| ||| | | |||||||| Sbjct 347 TCAAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCC 406 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | || | ||||| || | |||||||| Sbjct 407 TGGATC-TTAGCTTTAACATTGTCAATGGTGTCAGAGCTCTCGACTTCGAGAGTGATGGT 465 Query 34357 TTTGCCGGTGAG 34368 || |||||||| Sbjct 466 CTTACCGGTGAG 477 >seq14623 Length=969 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || || ||| ||||||||| || |||||||| | || ||| | || Sbjct 929 AGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCT 870 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || || || || || ||||||||||| ||| | || |||||||| Sbjct 869 TCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 810 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | || | || || |||| || ||||| Sbjct 809 TGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTC 750 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || ||||| |||||||||||||| Sbjct 749 TTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322932067319840