Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1997 190 2e-43 >seq1997 Length=5797 Score = 190 bits (210), Expect = 2e-43 Identities = 555/837 (66%), Gaps = 46/837 (5%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||| |||||||| |||||| ||||| |||||||||||||| || | ||| || || | Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||||||||||| ||||| || ||| | | | ||||| ||||| | || Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 |||||| || | |||||||||| || ||| ||||||| | ||||||||| ||||| Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA---CCGCTTCAATGAT 16179 | || || | | |||||||| ||| | | |||| |||| || || | | | ||| Sbjct 2004 GCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGAT 2063 Query 16180 -----TATATCT--CTTACTACACTAT-TTAACGGAGGGTTTAATAAGTGTTTAAACATT 16231 || ||| ||| | ||| | ||||| |||| | | ||| ||| | Sbjct 2064 TTCTGTAATTCTGGCTTTTGAAACTTTATTAAC-GAGG---TGGTGGTTGTGCAAA---T 2116 Query 16232 ATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTA 16291 || |||||||||||||| | ||||| || | || || || |||||||| ||| Sbjct 2117 GCAC-TGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTA 2175 Query 16292 AGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAG 16351 ||||| ||||| | ||| |||||||| | |||| | |||| |||| || || || Sbjct 2176 AGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAA 2235 Query 16352 AATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactt 16411 || || ||||| || || ||||| |||| || || ||| | | | | | | | Sbjct 2236 AAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATG----AATCGGA--T 2289 Query 16412 tctatccattttttagcccaatttgctttttgtttAA-CACAGTTCATGTTCTCTATTGC 16470 || ||||||||| |||||| | ||||||| |||| | | || | || | || Sbjct 2290 TCAATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACT-TCCAAAGC 2348 Query 16471 ATTAAATAAATAAtttttttCTTTGCT--ATCTAAAATATAAGTATCTATTAGTAAACTA 16528 | || | | | ||||| |||| |||| | ||| ||||| || || | | | Sbjct 2349 GTGGAAAAGCTGGTCCTTTTC--TGCTTCATCTTTTACATACGTATCAATCAGAAGAGAA 2406 Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTT-C 16587 || |||| || ||||||||||| || || || || || || || |||||| | Sbjct 2407 TAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCC 2466 Query 16588 GGATATTTGTACTTCAGAGTA-AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGC 16646 ||||| ||| ||||| | || ||| | ||||| | |||||| || || || || || Sbjct 2467 GGATA-TTGAACTTC-GTTTACAAAATTCTCTGCCAGGTTTTCATTCACAATACCGTCTG 2524 Query 16647 TAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTAT-------CTGAA 16699 || |||||||| || | || ||||| ||||||| ||| || | || || | Sbjct 2525 ATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCTTAT 2584 Query 16700 AGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAA 16756 ||| |||||| || ||||| | ||||| | ||||| ||||||||||| Sbjct 2585 TGTT----CCAGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAA 2637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462306534825400