Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002671.1 Length=15179 Score E Sequences producing significant alignments: (Bits) Value seq22985 105 6e-19 seq10330 100 3e-17 >seq22985 Length=562 Score = 105 bits (116), Expect = 6e-19 Identities = 101/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 14535 GTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAGGC---AAA 14591 ||||||||||| ||||| |||||||| || ||||| |||||| | || || ||| ||| Sbjct 342 GTAAAATGGTTCAACGCTGATAAAGGTTTCGGCTTCATCACTCCTGACGATGGCTCAAAA 401 Query 14592 GATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGGT 14651 || |||||| |||||||| || ||||| ||||| | |||||| || || |||||| Sbjct 402 GACGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGCTACAAATCTCTGGACGAAGGT 461 Query 14652 CAAAAAGTT 14660 || |||||| Sbjct 462 CAGAAAGTT 470 >seq10330 Length=1391 Score = 100 bits (110), Expect = 3e-17 Identities = 100/129 (78%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 14534 AGTAAAATGGTTTAACGCAGATAAAGGATTTGGCTTTATCACTTCAGAAGAAG---GCAA 14590 ||||||||||||||||||||||||||| || ||||||||||| | || || | |||| Sbjct 161 AGTAAAATGGTTTAACGCAGATAAAGGTTTCGGCTTTATCACCCCTGATGACGGCAGCAA 220 Query 14591 AGATTTGTTCGCTCACTTCTCAGCAATCCAATCTGATGGATTCAAATCACTTGATGAAGG 14650 |||| | |||| |||||||| || ||||| || | |||||| | || || ||||| Sbjct 221 AGATGTCTTCGTACACTTCTCTGCTATCCAGAGCGACAGCTTCAAAACGCTGGAAGAAGG 280 Query 14651 TCAAAAAGT 14659 || ||||| Sbjct 281 CCAGAAAGT 289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 48434489133094