Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq330 102 2e-16 seq195 87.8 4e-12 >seq330 Length=19076 Score = 102 bits (112), Expect = 2e-16 Identities = 258/384 (67%), Gaps = 14/384 (4%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || ||||| ||||| ||| | |||||||| || || || |||||||| || || |||| Sbjct 5688 CTACCTCACTTGCTATTCTATGGTCCTCCGGGCACCGGTAAGACGTCGACTATAGTGGCC 5747 Query 254061 CTGGCCCG--AACCCTGTTGGGC--GAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAA 254116 ||| || ||| || |||| | || || | | ||| | | ||| |||| Sbjct 5748 GTGGGACGTCAACTCT-TTGGCCCGGATTTCCGCAAAAATGGTCGCTTCTTGGAGTTGAA 5806 Query 254117 CGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGA-CTTTCTCCAAGA 254175 ||| || || || || || | | || || ||||| ||| |||| | |||| |||| Sbjct 5807 CGCATCGGATGACCGAGGCATCAAAGTGGTGCGCGAGAAGGTCAAAAGCTTTGCTCAAGG 5866 Query 254176 TGTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGG 254235 || | | || ||| |||| |||||||||||| || | | ||||| |||| Sbjct 5867 TGCCATCAGCACTGT--CAAT--GGCTTACCGCCTTTCAAGATCATTGTGCTGGATGAGG 5922 Query 254236 CGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCG 254295 | ||| | ||||| | ||||||||||| || || || || | |||||||| | ||| Sbjct 5923 CCGACTCAATGACAGGTGACGCGCAGTCGGCACTGCGTCGCATGATGGAGAACTATTCCA 5982 Query 254296 TTGTGACGCGTTTTTGCCTGGTGTGCAACTACGT--GTCGAAGATCATCGCCCCGCTGGC 254353 || || || || |||||| | || |||||||| |||| || || | || |||| Sbjct 5983 AGGTCACACGCTTCTGCCTGATCTGTAACTACGTGAGTCG--CATTATTGAGCCCGTGGC 6040 Query 254354 TTCTCGGTGCGCCAAGTTTCGATT 254377 || | || ||||||||||| || Sbjct 6041 CTCAAGATGTGCCAAGTTTCGCTT 6064 >seq195 Length=24554 Score = 87.8 bits (96), Expect = 4e-12 Identities = 172/251 (69%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 157195 TCAAAAGTCCGCATCCAAACAAAACTGCTGCTTCTCACGTTCGAGCAAAACCCCGGGCTT 157254 ||||||||| ||||||| | |||| || | ||| | ||| || || | ||| Sbjct 23640 TCAAAAGTCGGCATCCAGAGTAAACACTTGATCCTCTGCTGCGACGCCCACTCCAGCCTT 23581 Query 157255 GCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTC 157314 | ||| || | || | |||||||| ||||||||||| ||||| || || |||||||| Sbjct 23580 GGAGTATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGTGAGATCATGTC 23521 Query 157315 CATCCACTCGAATGGGTTGGCGCAGTTGTACACCTT-GTCGTACCCCAGCTG-GTTCAGC 157372 |||||| ||||| ||||| | || ||| | ||| | | ||||| || || |||| Sbjct 23520 CATCCAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGAC--ACCCCCAATGAGTACAGC 23463 Query 157373 CAGTAGTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGC 157432 ||| ||||| |||| |||||||| |||| | | | | || ||||||||| Sbjct 23462 AGACGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCATGCCGATGAGC 23403 Query 157433 GCGACGGGAAG 157443 | || || || Sbjct 23402 TCAACAGGGAG 23392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073277467516352