Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq7414 120 2e-22 seq19645 100 2e-16 seq2166 95.1 1e-14 seq14623 93.3 3e-14 >seq7414 Length=1926 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| |||||||||||||||||||||| ||| ||| | || ||||| || Sbjct 21 GTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTG 80 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| ||||| ||||| ||||| ||||| | || ||||||||| ||| || Sbjct 81 CTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTT 140 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| ||| || || | || |||||||||||||| Sbjct 141 CGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGT 200 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || |||||||| || || ||||| ||| || Sbjct 201 CAACGTCTTCACGAAAATCTGCATCTTGTCT 231 >seq19645 Length=690 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || || || || || ||||| || Sbjct 539 CTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAA 480 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| ||||| | |||||||||||| || ||| ||| || Sbjct 479 GATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTT 420 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||||||||| | ||| || ||||| || ||||| |||||||| Sbjct 419 ATCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCAC 360 Query 45325 AAAGATTTGCATG 45337 ||||| |||||| Sbjct 359 GAAGATCTGCATG 347 >seq2166 Length=5462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/192 (71%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| ||||||||||| || | ||| ||| ||| || || || ||||| || Sbjct 776 TTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCG---AGCTGCTTGCCGGCAAAA 832 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| ||||| ||||| || || | ||| ||||| ||| ||||| ||||| || Sbjct 833 ATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTG 892 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | || ||| |||||| |||| || || |||||||| ||||| ||||||||| Sbjct 893 TCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACA 952 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 953 AAGATCTGCATG 964 >seq14623 Length=969 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| ||||||||| |||||||| || ||||| ||| || || | || |||| Sbjct 241 CAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCA 182 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | || ||||| || ||||||| ||||||||||| || || | || ||||| ||| | Sbjct 181 GCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGA 122 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 ||||| ||| || | | | |||| | ||| || || | || || ||||||| Sbjct 121 TTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGC 62 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || ||||| || || ||||||||||| || Sbjct 61 CGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394904080461319