Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1997 215 5e-51 seq195 114 1e-20 >seq1997 Length=5797 Score = 215 bits (238), Expect = 5e-51 Identities = 584/884 (66%), Gaps = 30/884 (3%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||| |||||||| |||||||||||| ||||| || |||||||| | | || || | Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 |||||||||||||| ||||| | || || ||||| | |||| |||| ||||| || Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||||| || | | || || | ||||| | |||||| | ||||| || |||| Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 14092 TTTTACAGGAATTATATTG-GTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | || |||| | ||| |||| ||||||| |||| ||| | ||||| | | Sbjct 2004 GCTCACCGGAAG-AGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGA 2062 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTT-------TAAAAATTAAA 14203 | ||||| | | || ||| | |||| || || | |||| Sbjct 2063 TTTCTGTAATTCTGGCTTTTGAA--ACTTTATTAACGAGGTGGTGGTTGTGCAAATG--- 2117 Query 14204 CAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| |||||||||||||| | ||| ||||| | ||| | ||| |||||||| || | Sbjct 2118 CACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAG 2177 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 || ||||||||||| |||||||| |||||| | || | | ||||| ||| || || || Sbjct 2178 ACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAA 2237 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 ||||| || || || ||||| || || | || ||| |||| || | || Sbjct 2238 GATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGAATCGGATT------C 2291 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||||||| |||||| || | |||||| ||||| | | ||| | ||| | Sbjct 2292 AATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACTTCCAAAGCGTG 2351 Query 14443 AAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14500 || | || ||||| ||| || | || | | || |||||||| || | ||| Sbjct 2352 GAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACA--TACGTATCAATCAGAAGAGAATAG 2409 Query 14501 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGAC 14560 |||| ||| || || ||||| || || || || || ||| || ||||||| | Sbjct 2410 GTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGGA 2469 Query 14561 CATTGTACCTCTGAGTA-AAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 |||| || || | || ||| | || |||| |||||||| || ||||| || || Sbjct 2470 TATTGAACTTC-GTTTACAAAATTCTCTGCCAGGTTTTCATTCACAATACCGTCTGATGC 2528 Query 14620 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAG---TTTTTT 14676 |||||||| || || || | ||| ||||| |||| ||| ||||| | || || || Sbjct 2529 AGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCTTATTGTT 2588 Query 14677 CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGC 14736 ||| || | |||||||| | ||| | ||| || | ||||||||||| || | Sbjct 2589 CCAGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTGCTTCCAT 2648 Query 14737 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGaaaaa 14780 ||| |||||| |||| || || | | | |||||| |||| Sbjct 2649 TTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAA 2692 >seq195 Length=24554 Score = 114 bits (126), Expect = 1e-20 Identities = 364/553 (66%), Gaps = 16/553 (3%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| || ||| | |||||||| | ||| ||||| || || ||||| | | Sbjct 23291 CAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGA 23232 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 14322 || ||||| | || ||||| || | ||| || || | ||| ||| || || || ||||| Sbjct 23231 CCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGG-AGCAGAAGGAGCCAGAGAAGAA 23173 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG-CTTTTTTGTTCG 14381 || ||||| |||| || ||||| | | || ||| | | || | | | Sbjct 23172 GATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGTC 23113 Query 14382 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14441 | | ||| || ||||| | | ||| || || | | | || || ||||| ||| Sbjct 23112 ACA-CCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGCAC 23054 Query 14442 TAAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATA 14499 | ||| | ||||||||| || | ||||| |||| || ||||| |||| ||| Sbjct 23053 GCAGCAAAAGGTCCTTCTCTACAGCGTCCTTGA--TGTACGTGTCAATGAGTAGCGAATA 22996 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG- 14558 | || ||||| ||||| || ||||| ||||||||||| || ||||| | |||||| | Sbjct 22995 GACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTTCGGG 22936 Query 14559 -ACCATTGTACCTC--TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 ||| || || || || || || | ||||| |||||||| || || ||||||| Sbjct 22935 AACC--TGCACTTCGTTGCTGAAGTTCAT--GGCCAGGTTTTCATTCACAATGCCATCAC 22880 Query 14616 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTT 14675 | |||||||| || || | | | || ||||||| |||| | | |||| |||| Sbjct 22879 TGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTTTT 22820 Query 14676 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAG 14735 ||||||| | || | ||||| | || ||| | |||||||| || ||| Sbjct 22819 TCCAATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTCAG 22760 Query 14736 CTTTTTTATACAT 14748 |||| || ||||| Sbjct 22759 CTTTCTTGTACAT 22747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482131323996520