Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2111 111 3e-19 seq1969 104 5e-17 seq451 91.5 3e-13 >seq2111 Length=5547 Score = 111 bits (122), Expect = 3e-19 Identities = 179/255 (70%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 35582 GCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGC 35641 || ||||| || |||||| | ||| |||||||| || |||| |||| || ||| Sbjct 3212 GCACTTCCACCCTGCCACGCCTTTTTTCAGTTTTATGTAGCAGATGGCAAATTATCCTGC 3271 Query 35642 CAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATAC 35701 ||||| ||||| |||||| ||| || || || ||||| || || || ||||| || Sbjct 3272 CAGTTATATCAAAGAAGCGCCGATATCTTTTTAGGAGTGCCTTTTAACATAGCATCTTAT 3331 Query 35702 TCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCT 35760 | | |||| |||| || ||| | | | | ||||||||||||| ||||||| Sbjct 3332 GCATTATTGACATTGATGATTGCTCAGGTTTGCGATT-TAAAACCGGGAGATTTTATCCA 3390 Query 35761 CACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCAGTTGTG 35820 ||| |||||||||| ||||| ||||| | ||| ||||| |||| || ||| | | Sbjct 3391 TACTTTTGGTGACGCGCACATCTATAACAACCATATTGAACAGTTAGAGTTGCAACTTTC 3450 Query 35821 CCGCGTCCCTAGACC 35835 ||||| ||| | ||| Sbjct 3451 CCGCGACCCGAAACC 3465 >seq1969 Length=5862 Score = 104 bits (114), Expect = 5e-17 Identities = 310/471 (66%), Gaps = 12/471 (3%) Strand=Plus/Minus Query 35321 AAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTA 35380 ||||| || ||||||||| | |||||| || || || | ||||||||||||||| | Sbjct 2634 AAGAACATTCACATCTGGGATAGTAATGGCTCACGTGAGTATTTGGACAGTAGAGGACTG 2575 Query 35381 TACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGT 35440 | | | | || ||| | ||||| || || || || ||||||||||||||||| Sbjct 2574 CAGTCACGTGAGGTCGGGGATCTTGGACCGGTGTATGGTTTTCAATGGCGTCATTTTGGC 2515 Query 35441 GCTGAATAT---GATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCC 35497 || | || |||| || | |||| || ||||| | || | || || | ||| Sbjct 2514 GCCAAGTACACGGATA--TGCACG-CCGACTACACTGGCCAAGGCGTGGACCAGCTCGCC 2458 Query 35498 AATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGG 35557 | | | | | || | ||||| ||| | |||| | | |||| ||| Sbjct 2457 GAGGTGATCCATAAGCTCCGTACGAATCCTACTGACCGCCGGATTGTACTTTCGGCTTGG 2398 Query 35558 AATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGA-CTGCTCAATTTTA 35616 || ||| ||||| | ||||| || || || ||||||||| ||| ||| || || Sbjct 2397 AACCCTGCCGATCTCAAAGAAATGGCGCTACCACCGTGCCACATGTTCTG-TCAGTTCTA 2339 Query 35617 TGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTG 35674 || || |||| || ||||||||||| |||| ||||| ||| || ||| || | Sbjct 2338 CGTAGCAGATGGTGAGCTGTCGTGCCAGATGTACCAGCGGTCAGCCGACATG--GGACTT 2281 Query 35675 GGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTG 35734 |||||||| || || ||||| ||| | |||||||| | | || | || |||| Sbjct 2280 GGCGTGCCATTTAACATTGCCAGCTACGCGCTTCTGACGCGTTTGGTAGCGCAAGTGGTA 2221 Query 35735 GGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTAT 35785 || |||||||| || ||||||| | ||||||| |||||| | ||| Sbjct 2220 GGGCTAAAACCAGGCAAGTTTATACATGTAATTGGTGATGCACACGTGTAT 2170 >seq451 Length=16219 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93595 AGTACATTACGATTATACATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGG 93654 ||||| |||||| |||||||| || || | ||||| | ||||||| |||||||||| Sbjct 7958 AGTACGCGACGATTGTACATGTTTGATGTGTACGGCTCGATGGATTCATTGTTGCCCAGG 8017 Query 93655 ATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCATAC 93714 ||||| ||||| || ||||| ||||| ||||| || | || || || ||| ||| | | Sbjct 8018 ATCTGGGCAGTTGAAGCAGTTGGCATAGGAGCCACTAGCAAAGAGTTACGAATACCGTGC 8077 Query 93715 TTCAT 93719 || || Sbjct 8078 TTGAT 8082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989133399419745