Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq10062 304 5e-78 seq24399 205 3e-48 seq3144 107 7e-19 seq26039 98.7 4e-16 seq10458 91.5 5e-14 seq26761 89.7 2e-13 seq1466 80.6 1e-10 >seq10062 Length=1426 Score = 304 bits (336), Expect = 5e-78 Identities = 637/939 (68%), Gaps = 33/939 (4%) Strand=Plus/Minus Query 4131 ACCGATCTCGAATCGGAAGCCGGCGACACCATCACCTACGATCTCTCGGTTCAGCTCAAG 4190 ||||| || ||| |||||||||||||||||||| ||| || || ||||| ||||| Sbjct 994 ACCGACCTGGAACAGGAAGCCGGCGACACCATCAGCTATGACCTGTCGGTCCAGCTGGGC 935 Query 4191 AATAAGCCGACCTACGGCGACGAGCGACTCGAGGGCAAAGAGGAAAGTCTGAAGTTCTTC 4250 ||| || | | ||||||| ||| ||||| | || | ||| | |||||| Sbjct 934 GGCGAGCTGATCGAGGGCGACGCCAAGGCCGAAGGCAAGGGCGAGAAGCTGGACTTCTTC 875 Query 4251 TCCGACGAGGTGAAGGTCGATCAGATGCGCCACGGCGTTTCCGCCGGTGGCAAGATGTCC 4310 | ||| |||| |||| ||| || | ||| | ||||||| |||||| Sbjct 874 ACGGACAAGGTCTTCATCGACCAGGCCCGTAAGCCCGTCAGCTGCGGTGGCCGCATGTCC 815 Query 4311 CGCAAGCGCACCGCGCACAACATGCGCCAGATCGGCAAGAACCGCCTGTCGGACTACTGG 4370 ||||||||||||| |||| || ||||| || ||||| ||||||||| |||| |||||| Sbjct 814 CGCAAGCGCACCGTGCACGACCTGCGCAAGGTCGGCCGCAACCGCCTGACGGAATACTGG 755 Query 4371 TCGAAGTTCAACGACCAGATGATTTTCATCTACCTCTCCGGCTCGCGCGGCATCAACGAA 4430 || | ||||| || || | ||||| ||| | ||||| |||| ||||||||| Sbjct 754 GCGCGCGTGTACGACGAGTTGTTCTTCATGTACGCCGCCGGCGCGCGTGGCATCAACCCG 695 Query 4431 GACTTCATCGAA--GAT--ACGACTTGGGCCGGGCATGCTGCAAACCCGATTC-AGGCGC 4485 ||||||| | | | | || |||||| || | ||| || ||| |||||| Sbjct 694 GACTTCAACTTCCCGCTGGATTACGCGGGCCGCGC---CAACAACGCC--TTCGAGGCGC 640 Query 4486 CGGATGCGGCTCACATCCTCTACGGCGGCGACGCGACTACTAAGGCCTCGATCGACGCCA 4545 | ||||| | |||||||| | ||||| || | || | |||||| || | | | Sbjct 639 CCGATGCCGAGCACATCCTGTTCGGCGACGGC---ACCAGCAAGGCCACGCTGACCAGCG 583 Query 4546 CCGACAAGATGAGCCGCGCCGTGATCGAGCGCGCGCAGGTCCAGGCC----CGCATGATG 4601 | | ||||||| ||| | ||||||||||||| | ||||| |||| | | Sbjct 582 CGGGCAAGATGTCGCGCACGCTGATCGAGCGCGCCAACACGAAGGCCGCGGCGCAGGGCG 523 Query 4602 TCGGCCCGGGATCCGAAGAACGCCAACATGATGCCGCTGATGATCAACGGCGA-AGCG-- 4658 |||| | |||||| |||| | | ||| | || | || || || |||| Sbjct 522 GCGGCGCCA----CGAAGACCGCCGA---GCTGCAGGGCATCACCATCGCCGGCAGCGAG 470 Query 4659 CACTACGTCTGCGTCATGAACCCGTTCCAGGAACATGACCTGCGCAACAAC---GACCAG 4715 |||| ||| ||| ||| |||||||||||| || ||||||||| | | | | || Sbjct 469 CACTTCGTGACCGTGATGCACCCGTTCCAGGCGCACGACCTGCGCGTCCAGACGGGCGAG 410 Query 4716 GGCGGCTGGCTGGAAATCCAGAAGGCGGCTGCTACGGCGGAAGGCCGAAGCAACGCCATC 4775 ||| |||||||||| |||||||||||||| || |||||||||| || |||| | ||| Sbjct 409 GGCAGCTGGCTGGACATCCAGAAGGCGGCGGCCGCGGCGGAAGGTCGGGACAACCCGATC 350 Query 4776 TTCAAGGGTGGCCTTGGCATGATCAACAACACCGTCCTGCACAGCCATGAAGCAGCGATC 4835 ||||||| ||| ||||||||| |||||| ||||||||| || | | | | Sbjct 349 TTCAAGGACAACCTGGGCATGATCGGCAACACGATCCTGCACAAGCACAAGTCCGTCGTG 290 Query 4836 CGTTTCAGTGACTATGGCGCCGGCAACAACGTTGCGGCCGGTCGAGCCCTGTTCATGGGC 4895 || |||| ||||| ||||||||| |||||| | |||| || || |||||| ||||| Sbjct 289 CGGTTCAACGACTACGGCGCCGGCGGCAACGTGCCCGCCGCGCGTGCGCTGTTCCTGGGC 230 Query 4896 CGTCAGGCTGGCGTTATCGCTTTCGGCTCCGCAG---GCGGCTTCCGCTACACCTGGACC 4952 |||||||| || | || ||||| |||| | ||||| | |||| | |||| || Sbjct 229 CGTCAGGCCCTGGTCCTGGCCTTCGGTTCCGGTGGTAGCGGCCTGCGCTTCGACTGGTCC 170 Query 4953 GAAGAGACGAAGGATCACGGCAACGAACCTGTCGTCGCATCCGGCGTGATCAACGGCGTG 5012 || | || ||| ||||||||||| | || | |||| ||| |||| | Sbjct 169 GAGGTCCCGCTGGACCACGGCAACGACATCGAGATCTGCGCTGGCGCCATCTTCGGCATC 110 Query 5013 AAGAAGACCCGCTTCAACAACCGCGACTACGGCGTGATC 5051 |||||||| |||||||||| | |||| |||| || || Sbjct 109 AAGAAGACGCGCTTCAACAGCAAGGACTTCGGCATGTTC 71 >seq24399 Length=515 Score = 205 bits (226), Expect = 3e-48 Identities = 354/508 (70%), Gaps = 10/508 (2%) Strand=Plus/Minus Query 43396 CGTGGCGCGCAACAAGCAGGAAGCGCTTGCGGCTCTGACCCAAACCGCCGATCTGACCGC 43455 |||||||||| || |||||||||||||||||| ||| ||| |||||| || |||| Sbjct 503 CGTGGCGCGCCACCAGCAGGAAGCGCTTGCGGGACTGGGCCAGCTCGCCGAGCTCGCCGC 444 Query 43456 AGTCGTGGGTGGTCTCGGCGACGGCGAAATTGTAGCTCCGCAGCAGGGCAATGATCTGAT 43515 ||||||| ||||||||| || || | ||| || | ||| || | |||||| | Sbjct 443 AGTCGTGATCGGTCTCGGCCACCACGTAGCCGTATGCCCTGAACAGCGCGACGATCTGGT 384 Query 43516 CGAGCAACTTGCGGCCACGGTTCATGATGCGCGGCACATTTTCGAAAATGATCAGCTTGG 43575 | |||| | |||||| ||||| |||||| || || || ||||| | || || || Sbjct 383 CCAGCAGCGGGCGGCCGCGGTTGGCGATGCGGGGGACGTTCTCGAAGACGAACATCTCCA 324 Query 43576 GAAGCTTGTCCTTGAAGGCTTCCAGCATCAGCCACACGCCGCGCAACGTCAGCCGATTGA 43635 | | ||||||| | || ||||||| |||| ||||||||||| || ||||| || | Sbjct 323 CCGGGTCGTCCTTGTACGCCTCCAGCACCAGCATCACGCCGCGCACGGTGAGCCGGTTCA 264 Query 43636 GGGCCTGATACTTGGCGGTCGCGCTCGACTGCTCGGACAGCAAGCCGGAGAAACCTTTGC 43695 |||| ||||| |||| |||| ||| |||| || ||||||||| || |||| Sbjct 263 GGGCGACGTACTTATCGGTGCGGCTCTTGGTCTCCGACATCAGGCCGGAGAAGCCCTTGC 204 Query 43696 ATGGAGCGGACAAGAACACGATATCGGGGAACTCGCCATGCGCTGCGCGCC--GAATGTC 43753 | || || |||| ||||||||| | || |||| ||| ||| | | | ||| Sbjct 203 ACGGCGCCGACAGGAACACGATGTGCGGTCGCTCG--TTGCCGAAGGCGTCATGCACGTC 146 Query 43754 GTCC--GGT-ACCGCCTGCTGCCAATCGGGATCAGGGTCGCGACTGTGAAAGGCCCGGTA 43810 | || ||| ||| | || |||| || | || |||| | ||| ||||| ||||| Sbjct 145 GGCCGTGGTGACCTC--GC-GCCAGTCCGTCGGCGGCTCGCAGCCGTGGAAGGCGCGGTA 89 Query 43811 CTGCTCCAGGTCGAACAGATCGAGCAGGGTGCCGGGAACGCCGGCAAGGCGCGTGAAATC 43870 ||| || |||||||||| || | || ||||||| | ||||||| ||||| ||| || Sbjct 88 CTGGTCGCGGTCGAACAGGTCCATCACGGTGCCGCGGGCGCCGGCGAGGCGGTCGAAGTC 29 Query 43871 ACGGATGGCCGCCGGATCGTTGTCGATG 43898 || ||||| || | ||| |||||| Sbjct 28 GCGAATGGCGGCGCGGTCGACATCGATG 1 >seq3144 Length=4062 Score = 107 bits (118), Expect = 7e-19 Identities = 344/516 (67%), Gaps = 52/516 (10%) Strand=Plus/Minus Query 27789 TCGTCTTGCCCGA---ACCCAGCCACACTTTGAACTCGCCCAACGTCGTCGGACTGATGG 27845 |||||||||||| || | ||| | ||||||||| || |||| || ||||| Sbjct 537 TCGTCTTGCCCGCGTCACGAACCCAGGCCTTGAACTCGTCCTGCGTCATCTTGGTGATGT 478 Query 27846 CGCCGAGCCCCTTCCAGCCGCTGGTGTAGTTGTCGAGGTAGGCGGCGCGCGCTTCGTCCT 27905 |||| || ||| ||||||| | |||||| ||||||| | ||| ||||| ||| ||| Sbjct 477 CGCCCAGGCCCGTCCAGCCCTTCTCATAGTTGCCGAGGTATGTGGCCCGCGCATCGGCCT 418 Query 27906 CGCTGGCGTAGCCGGCCATTACCTTGTGCTCGTCGAAGCGGCCACGTGCGGGGTCACGCT 27965 || ||| ||| || ||||||||||| ||||| |||| |||| |||| || Sbjct 417 CGTCGGCCGCGCCCAGCACCACCTTGTGCTCATCGAACGAGCCATC-GCGGT-TCAC-CT 361 Query 27966 GATCGACGACAAAGATCGG---GGCGGAATCG-TCGAGCACCTCGGTACCGGGCTTCACG 28021 | || ||||| || | ||| | | | ||| ||| || ||| ||| ||| | Sbjct 360 GGTCCACGACGAACACCGGCAGGTCCGGGTCGCTCGCGC-----GGT--CGG---TCATG 311 Query 28022 AAGATGTCGATATGGTCCTTGTC-GCGACCGACCGTGCC-TCGAATGTAGCCATAATGGC 28079 || | ||| | ||| |||||||| ||| || || | ||| | ||| |||||| || ||| Sbjct 310 AACACGTCCACATGATCCTTGTCCGCGCCC-ACGGAGCCCTTGAA-GTAGCCGTAGTGGT 253 Query 28080 TCTTCATCTTGACGGACCACGGCTTGCCGGATGGGCTCGTGCCTTTGCGCTCGGAGCCAG 28139 ||| || | || | ||| | ||||| | | ||| ||| | Sbjct 252 TCTGCAGCG-GAGG--CCATT-CAGGCCGGCGGCG-------------GCT----GCCGG 214 Query 28140 CCGGGTTCTCGATCGAGATATCCAACCCGCCAAGGCGGATGCGGCCGACCTTGTAGTTGC 28199 | ||||||||||| ||| ||||| || ||||||| | |||| |||||| |||| Sbjct 213 CAGGGTTCTCGATGCTGATGTCCAAGCCATTCAGGCGGACGTGGCCCTTCTTGTAATTGC 154 Query 28200 CGGCTTCCTTCTGTGCCTGAGTGGGCTCGGGCAGGGCGT--TAGACGGCGAAGTCGCGGC 28257 | || |||||||| |||| |||||| |||||| ||| | | || | || ||||| Sbjct 153 CCGCCTCCTTCTGGGCCTCGGTGGGCGTGGGCAGATCGTTCTGGTCGCTG--GTAGCGGC 96 Query 28258 TTCGTGA---GCCGCGTCATCGACTGCTGCGACTGG 28290 || ||| || ||||| ||||||| ||| |||| Sbjct 95 CTCCTGAGCGGCGGCGTCCACGACTGCGGCGGCTGG 60 >seq26039 Length=465 Score = 98.7 bits (108), Expect = 4e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 43171 AGTCCCGCAGGTTGCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCAG 43230 |||| ||||| ||||||||||||| || ||| || |||||| || ||| | Sbjct 333 AGTCGCGCAGCATGCCGTCCTCGACCTGCAGGCGGTTCAGGCTGCGCCAGTCGCTGCCGG 392 Query 43231 CCTCGACGAAGGCAAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGGG 43290 |||| ||||| || |||||||||||||||||||||||||||| || || || || | || Sbjct 393 CCTCCACGAACGCCAGGCGCACCCACGTCTTCCACTGCAGCGCCGGGACGCGGTGCATGG 452 Query 43291 GGCCGCC 43297 ||||||| Sbjct 453 GGCCGCC 459 >seq10458 Length=1375 Score = 91.5 bits (100), Expect = 5e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41906 GAACGTCTCGCCGGTCATGGCGAGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGT 41965 ||| |||| || ||| || |||||||| ||| || | | || |||||||| Sbjct 423 GAAGGTCTGCCCCGTCCACGCCAGCAGCAGGGTGCGGCCGAACTCCTCCGCGATCGCGCG 364 Query 41966 CGCCGCATCCGGAGGTACCGCGTTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTGGCC 42025 ||| || |||| || || ||||| ||||||||||| |||||||| ||| | || Sbjct 363 CGCTGCCGCCGGCGGGACGGCGTTGCCGATGCGCTCGCGCCAAGCCTGGTCGCTGAGCCC 304 Query 42026 GTCGAGGGTGAATATCTCGTCTGGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGT 42085 ||| || | | ||| || || || || || ||||| || || | |||||| || Sbjct 303 GTCCAGCTCCAGTTGCTCCTCCGGGTCGACCAGCGACTGCAGGGCGGCGAGCTCGAGCGT 244 Query 42086 GGTGAACGGACGATGCCACGTGCCATCAAG 42115 |||||||||||| ||||| ||||| || || Sbjct 243 GGTGAACGGACGGTGCCATGTGCCGTCCAG 214 >seq26761 Length=444 Score = 89.7 bits (98), Expect = 2e-13 Identities = 173/248 (70%), Gaps = 13/248 (5%) Strand=Plus/Minus Query 27840 TGATGGCGCCGAGCCCCTTCCAGCCGCTGGTGTAGTTGTCGAGGTAGGCGGCGCGCGCTT 27899 ||||| ||||||| || ||||||| ||| ||||||| | ||||| | ||| |||| Sbjct 272 TGATGCCGCCGAGGCCGGTCCAGCCCTTGGAGTAGTTGGCCAGGTACGTCTTGCGGGCTT 213 Query 27900 CGTCCTCGCTGGCGTAGCCGGCCATTACCTTGTGCTCGTCGAAGCGGCCACGTGCGGGGT 27959 | ||||| ||| ||| || ||||||||||||||||||| || ||| | | | Sbjct 212 CAGCCTCGTCGGCTGCGCCCATGATGACCTTGTGCTCGTCGAAGCTGC--CGTCCTTGTT 155 Query 27960 CACGCTGATCGACGACAAAGATCGG--GGCGGAATCGTCGAGCACCTCGGTACCGGGCTT 28017 | ||| || ||||| || | ||| ||| | ||||| | | |||| ||| | Sbjct 154 GA-TCTGGTCCACGACGAACACCGGCCGGCTG--GCGTCG-TCCGCGCGGT--CGG---T 104 Query 28018 CACGAAGATGTCGATATGGTCCTTGTCGCGACCGACCGTGCCTCGAATGTAGCCATAATG 28077 || ||||| ||||| ||||||||||| ||||| || || || | ||| || || || Sbjct 103 CATGAAGACGTCGACGTGGTCCTTGTCCTTGCCGACGGTACCGCGGAAGTAACCGTAGTG 44 Query 28078 GCTCTTCA 28085 | |||||| Sbjct 43 GTTCTTCA 36 >seq1466 Length=7219 Score = 80.6 bits (88), Expect = 1e-10 Identities = 100/132 (76%), Gaps = 4/132 (3%) Strand=Plus/Minus Query 39293 CGGTCCTGCGCGATGATTGCCGC-CCTCTGGTTCTCATTGAAGAG-GCAGGCATCCAGGA 39350 ||||| |||||||||| |||||| | ||| | | ||||||| || ||| | ||||| Sbjct 3296 CGGTCGTGCGCGATGA-TGCCGCAGCGCTGATCCGCATTGAACAGCGCATG-GTCCAGCC 3239 Query 39351 TGATGATCTGGATCAGTGTCGAGAAGCCGCGCTGGCGAGCCTTCGGAACGATGTTCCGGT 39410 | ||| ||||||||| | ||||||| |||| || |||||| | | |||||| |||| Sbjct 3238 ACAGGATGGCGATCAGTGTGGTGAAGCCGAGCTGCCGCGCCTTCAGGATGATGTTGCGGT 3179 Query 39411 GCCACATCCGGC 39422 |||| | ||||| Sbjct 3178 GCCAGAGCCGGC 3167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183532112043804