Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1997 206 2e-48 >seq1997 Length=5797 Score = 206 bits (228), Expect = 2e-48 Identities = 596/904 (66%), Gaps = 50/904 (6%) Strand=Plus/Plus Query 11334 CCATCTTT-TGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGAT 11392 ||| |||| |||||||| ||||| | |||||| ||||| || ||||| | || || Sbjct 1819 CCAGCTTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAG 1878 Query 11393 AT-ATACTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTC 11451 || ||| |||||||| ||| ||||| || | ||| || |||| ||||| || Sbjct 1879 ATCATA-TCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTC 1937 Query 11452 TGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACC 11511 | ||||||||| || | || ||||||| || || | |||||| ||||| || Sbjct 1938 TACTAATAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCC 1997 Query 11512 TAT-AAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAA 11570 || ||| || ||||||| || |||| | ||| || |||| |||| || || | | Sbjct 1998 AATTAAGCTC-ACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTA 2056 Query 11571 ------------TGATTATCGACGTTATAACTTCCTTA----GATGGTGGATGTAATAAA 11614 | ||| | | || ||||| ||| | |||||| ||| ||| Sbjct 2057 CCAGGATTTCTGTAATTCTGGCTTTTGAAACTTTATTAACGAGGTGGTGGTTGTGC-AAA 2115 Query 11615 TGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCA 11674 || || | |||||||||||||||| ||||| || | || | |||| Sbjct 2116 TG------CACT------GCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCA 2163 Query 11675 TTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAAT 11734 || ||||| || | || ||||||||||| |||||||| | |||| | |||| | ||| Sbjct 2164 TTTGAAAAAGTAAGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAAT 2223 Query 11735 GAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACC 11794 | || || || || ||||| || || |||||||| || | | |||||| || || Sbjct 2224 GCTCCTGAGAAAAAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGAA 2283 Query 11795 TTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----AT 11850 | | | | | ||||||||| ||||| || ||||| ||| ||| ||| | | Sbjct 2284 TCG--GATTCA-ATCCATTTTAAAGCCCAGTCCGCTTT-TTTCTTA---ATTGCCGGAAA 2336 Query 11851 TGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTAT 11910 | ||| | ||||| || | || |||||| | |||| ||||||| ||||| || Sbjct 2337 TACTTCCAAAGCGTGGAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACATACGTATCAAT 2396 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 | | | ||| |||| || ||||| ||||| ||||| ||||| |||||| | Sbjct 2397 CAGAAGAGAATAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAA 2456 Query 11971 TCGTGCCTCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAA 12029 | || || | | | || || || | ||||| | || || | || ||||| |||| Sbjct 2457 TTTAGCTTCCGGATATTGAACTTCGTTTACAAAAT-TCTCTGCCAGGTTTTCATTCACAA 2515 Query 12030 TACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAG 12089 |||| || | |||||||| |||| |||||||| ||||| ||||| || || ||| Sbjct 2516 TACCGTCTGATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTAT 2575 Query 12090 TTAATTTA---TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | | ||| | ||| || |||||| | ||||| | |||||| | ||||||| Sbjct 2576 TCAGCTTATTGTTCCAGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAA 2635 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 ||||||| | || |||||| | ||| |||||||| | || ||||||||||| | Sbjct 2636 AACTTGCTTCCATTTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAATCA 2695 Query 12207 CGAA 12210 |||| Sbjct 2696 CGAA 2699 Score = 170 bits (188), Expect = 2e-37 Identities = 614/951 (65%), Gaps = 12/951 (1%) Strand=Plus/Plus Query 37689 CAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAAT 37748 ||| || ||||| | || |||||||| |||| |||||||| | | | | || || Sbjct 212 CAATGAGATAGAAGCCAGGTTACATACCGCAATTTCATCTTTAGAAGTGTACTCCATGAT 271 Query 37749 CTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATT 37808 |||||||| || ||| || | |||||||||| || | || || ||||| || Sbjct 272 TTCTGTACACAGGTTAGAAGAGCGGATTGTTCCCAGGTTTTTCTGGTTTGATTTACGGTT 331 Query 37809 ACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGA 37868 | ||||||||| || || || || ||||| ||| ||||||| || | ||| Sbjct 332 TGCCGCATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAGATTCCAGAATTTT 391 Query 37869 TTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTTTGTTTCGTATTCTAT 37928 || ||| | |||||| |||| | | ||| | | | | |||| || | Sbjct 392 TTCCCAAAGTTCTCTTGCCTTAATGGTT--TTTCTTCCTCTGCCCTGTTCTTCATAAGAA 449 Query 37929 ATATAATTTG-TTAAAATCATTCCCCCATACATCGCATAA--TCCTGGACATTCGCATGG 37985 ||||| | || |||| ||| || || || ||||| ||| || |||||| ||| Sbjct 450 GTATAAAGCGCTTCAAATTCTTCACCG-TAAATATCATAAAGTCCCGGGCATTCGTTTGG 508 Query 37986 ACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCA 38045 |||||| | | |||| ||||| | || |||| ||| || || || | ||| Sbjct 509 ACACATCAACGTCCATGTAGAATCTTCCTGAACACGTTTCATGAACAAGTCCGAAGTCCA 568 Query 38046 TAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT 38105 | ||| |||||||| | | |||||| || || || |||||| || | Sbjct 569 CATGGCAAAGAATAAATCACGCGCACGCATTTCTTCTTTTCCATGGTT-TTTCTTCAGGT 627 Query 38106 TA-GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTC 38164 | | ||||| || |||||||||||||||| ||| ||||| || | | |||| | Sbjct 628 CAAGGAAATCAAAAATATCAGCGTGCCATGTTTCGATATAGATAGCAAAACTTCCTTTGC 687 Query 38165 TTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTA 38224 ||| | |||||||| | | ||| | | | || | ||| | | | ||||| || | Sbjct 688 GTTTTCCTCCTCCCTGGTCTACATAACGAGCGGTATCATTGAAAACACGCAACATCGGAA 747 Query 38225 CTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTAC 38284 | || || || || | |||||| | ||| ||||| | |||| | || || | |||| Sbjct 748 CAATTCCGTTTGACGTTCCGTTTGTTCCGCGGATATAGGAACCCGTGGCACGAACATTAT 807 Query 38285 TTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTAT 38344 || || | || ||||| || || || ||| ||| || ||| |||| ||||| Sbjct 808 GGATTGAAAGCCCGATTCCTCCAGCCGATTGTGAAATTTTGGCTGTTTGCTTTAGCGTAT 867 Query 38345 CAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAG 38404 | | || || || |||||||| |||| |||| || | || || ||||||||| | Sbjct 868 CGTAAATTCCGTCGATACTGTCGTCCTGCATTGCCAGAAGGAAGCAGGAAGACATTTGCG 927 Query 38405 GCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACA 38464 | |||||||||||| || ||||| || || | |||||| | || | || | |||| Sbjct 928 GTTTTGGAGTTCCGGCATTGAATAACGTTGGCGTTGCATGCGTAAAGAACTTCTTGGACA 987 Query 38465 AATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCC 38524 | ||| ||||| | ||| |||| | ||| || || || | | || | Sbjct 988 TCAGGTCATAAGTTTCCAATACTGCATCCAGGTCATTCAAATGGATTCCAACGGCAACAC 1047 Query 38525 TCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATT 38584 ||| | ||| |||||||||||||| | ||||| ||| ||| || |||||||| Sbjct 1048 GCATCAACATGTGTTGTGGTCTTTCCACAATTTTTCCATTTATTTTTAGCAGATACGAAC 1107 Query 38585 TTTCTAATGTTTTTATTCCAAAATAA--CTATATGAATAATCTCTATCGTA 38633 || || || || | ||| |||||| || ||| ||||||||| ||| Sbjct 1108 GCTCCAACGTCTTAAATCCGAAATAATCGTAGTTGA--AATCTCTATTGTA 1156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468316663714160