Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1969 163 2e-35 seq10726 109 5e-19 seq776 93.3 4e-14 seq6884 91.5 1e-13 >seq1969 Length=5862 Score = 163 bits (180), Expect = 2e-35 Identities = 311/451 (69%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 |||||| |||||||| || | | |||||| | | || || || |||||||| || Sbjct 2113 CGGAAATGGACGCGGTGTACGCGTCAGCTGTTGTAAAAGTGGCTCCACGTGGTTCAAATA 2172 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||| || ||||| | || | ||| | || || | || || || || || Sbjct 2173 CACGTGTGCATCACCAATTACATGTATAAACTTGCCTGGTTTTAGCCCTACCACTTGCGC 2232 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 | || | |||||| || ||||||||||| |||||||| || || || || |||||||| Sbjct 2233 TACCAAACGCGTCAGAAGCGCGTAGCTGGCAATGTTAAATGGCACGCCAAGTCCCATGTC 2292 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAA 21127 ||| |||| |||||||| |||||| |||||||| || || ||||| |||||||| || Sbjct 2293 GGCTGACCGCTGGTACATCTGGCACGACAGCTCACCATCTGCTACGTAGAACTGACAGAA 2352 Query 21128 AACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAAC 21187 | ||| || || || || ||||| ||| || || |||||||| || | | || Sbjct 2353 CATGTGGCACGGTGGTAGCGCCATTTCTTTGAGATCGGCAGGGTTCCAAGCCGAAAGTAC 2412 Query 21188 GATGCGCCGATC-GT-GGGGCCGCCTGTTAATTA--GATCCACCACGTAACGCAGCTGGT 21243 || || || || || || || | ||| ||| |||| || || ||||||| Sbjct 2413 AATCCGGCGGTCAGTAGGATTCGTACGGAGCTTATGGAT-CACCTCG--GCG-AGCTGGT 2468 Query 21244 CCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCC 21303 |||| || || || ||||| ||||| || |||||| || |||||||| | || Sbjct 2469 CCACGCCTTGGCCAGTGTAGTCGGCGTGCATATCCGTGTACTTGGCGCCAAAATGACGCC 2528 Query 21304 ACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | || || || |||||||| || ||||| || Sbjct 2529 ATTGAAAACCATACACCGGTCCAAGATCCCC 2559 >seq10726 Length=1340 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||| |||||||||| || ||||| ||||| ||| | |||||| ||| | || || | Sbjct 552 GTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 493 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || | ||||| || ||||||||||||||||| ||||| || |||||| |||||| | Sbjct 492 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 433 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAAC 21130 | | |||||| ||||||||| |||| || ||||||| ||||| ||| Sbjct 432 GCTGCGCTGGTAGAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 373 Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGC 21180 ||| || || || |||||| ||| || || | |||||| |||| Sbjct 372 GTGGCACGGCATCAGCGCCATCTGCGAAAGCTCGCCCACGTTCCAGGCGC 323 >seq776 Length=11329 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 ||||| || ||||||||||||||||| || || || || ||| ||||| ||| | | Sbjct 10615 GTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAGATGTCCGCGCTGCGC 10556 Query 21078 TGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAA 21137 ||||| ||||||||| |||| || |||||||| ||||| | || |||| || Sbjct 10555 TGGTATAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGGAAGAAGGCGTGGCAG 10496 Query 21138 GGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCG 21196 || ||| |||||| ||| ||||| || |||||| |||| | | |||||| || Sbjct 10495 GGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTGACGATGATGCGGCG 10437 >seq6884 Length=2068 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 20951 GTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGAT 21010 ||| ||||| |||| |||||||| || || || | || ||||| | || || | Sbjct 1742 GTGCGCGTCGCCCAGCGTGTGCACGAAATCGCCGACGCCGAGACCCGTCGCCTGCGCCAC 1683 Query 21011 CAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGC 21070 || | |||||| || ||||||||||||||||| ||||| || |||||| |||||| | Sbjct 1682 CATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 1623 Query 21071 GGACCTCTGGTACAGCTGGCAGGACAGC-TCCCCCCGAGCCACGTAAAACTG 21121 | | ||| || ||||||||| ||| | || ||| ||||||| ||||| Sbjct 1622 GCTGCGCTGATAGAGCTGGCAGCTGAGCTTGCCGTCGA-CCACGTAGAACTG 1572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427590716712720