Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq7874 80.6 6e-11 >seq7874 Length=1827 Score = 80.6 bits (88), Expect = 6e-11 Identities = 179/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 10203 GCTGCCGAGTTTGCCGCAAAGATGCAGGATGCTACCGGAACGGCGTCAGAAGACATGATG 10262 || |||||||| || || ||||||||||| ||||| | || | | |||||| | Sbjct 1527 GCCGCCGAGTTCGCAGCCAAGATGCAGGACGCTACGCGCACCACTGAGGGCGACATGCTC 1468 Query 10263 GGGCTGTTCGACACTATCCAGAAGGCGTTTTATCTGGGCGTTGACGATACCAACATGTTG 10322 || || | ||||| |||||| | ||||||| |||||||| ||| ||||||| || Sbjct 1467 GGACTCATGGACACGATCCAGCGGACGTTTTACCTGGGCGTGGACAGCGGCAACATGCTG 1408 Query 10323 TCCTTCTTCACTAAAACCAGTTCTGTTCTGAAGATGGTGAACAAGGACGGTCTTCAGGCT 10382 |||||| |||| | || || || |||| ||||| || || |||| Sbjct 1407 CAGGGCTTCACCAAAATGTCCCCGGTGATGGGCATCCTGAAAAAGGAAGGGCTGGAGGCA 1348 Query 10383 GCACAGAGCCTTGCCCCCATCAGCGTCATGATGGATCAGATGGGGATGAACGGGGAGTCG 10442 | | | || ||||| | || |||||||| |||| || ||| ||| |||||| Sbjct 1347 TCCAACATGCTGGCCCCGCTGCTGGTGATGATGGACCAGACCGGCATGGCCGGCGAGTCG 1288 Query 10443 GCAGGTAATGCCCTGCGAAAAGTTATCCA 10471 || || || ||| | || || || |||| Sbjct 1287 GCGGGCAACGCCATCCGCAAGGTGTTCCA 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118465183548648