Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq32362 122 9e-23 seq28136 107 2e-18 seq14623 91.5 1e-13 seq20474 89.7 5e-13 >seq32362 Length=298 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| ||||| || || || |||||||||||| | Sbjct 232 CCACCACGCAGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCC 173 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | | || || ||||||||||||||| | || || | |||||||| || || Sbjct 172 AGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGA 113 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||||| | || | || |||| | ||| || Sbjct 112 ATCCCTTCCTTGTC-CTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAAC 54 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| |||||||| || || ||||| |||||| Sbjct 53 CTCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCATA 5 >seq28136 Length=407 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| |||||||| ||||| || |||| || | ||||| | ||| || || Sbjct 208 GTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCA-TCTTCCAACTGCTTGCC 150 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | |||||||||||||| ||||| || || ||||||||||| |||||| || Sbjct 149 CGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTT 90 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||| ||| || || || || | ||| | |||||||| |||| || Sbjct 89 CACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGT 30 Query 139747 TTTTACGAATATTTGCAT 139764 |||||||| || ||||| Sbjct 29 CTTTACGAAGATCTGCAT 12 >seq14623 Length=969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| | |||||||| || || || || || |||||||| || Sbjct 188 TCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTA 129 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||||| |||| | || | ||||| | | ||| || |||| || | Sbjct 128 TCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATG 69 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||||| ||||| |||||||| Sbjct 68 GTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCAT 34 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || |||||||| || || || || || | |||||||||||| || || Sbjct 458 GTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCG 399 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||||||||||||| || || || || ||||| ||||| ||| || |||| Sbjct 398 GCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTT 339 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||| || || | || | |||||| || |||| ||| Sbjct 338 ACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCAGTCAGGGTT 279 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 278 TTGACGAAGATCTGCAT 262 >seq20474 Length=655 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || || || || || || |||| ||||| ||||| Sbjct 349 GTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGTGCGGCCATCTTCAAGCTG 408 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 |||||||| |||| || | ||||| || || || || || || ||||| ||| || Sbjct 409 CTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTT 468 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 |||| | || | |||||||| | ||| ||||||| ||| | ||||||||||| Sbjct 469 GGACTTTACATTATCGATTGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTCTTGCCGGT 528 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| |||||||| Sbjct 529 AAGGGTCTTAACGAAGATTTGCAT 552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495843629768800