Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1997 224 1e-53 seq195 107 2e-18 >seq1997 Length=5797 Score = 224 bits (248), Expect = 1e-53 Identities = 586/884 (66%), Gaps = 30/884 (3%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||| |||||||| |||||||||||| ||||| || |||||||| | | || || | Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||||||||||| ||||| || || ||||| | |||| |||| ||||| || Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||| || | | ||| || | ||||| | |||||| | ||||| || |||| Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 13760 TTTTACAGGAATTATATT-GGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | || |||| | ||| |||| ||||||| |||| ||| | ||||| | | | Sbjct 2004 GCTCACCGGAA-GAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGA 2062 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATG-------TTTAAAAATTAAA 13871 | |||||| | | || ||| | |||| || | | | |||| Sbjct 2063 TTTCTGTAATTCTGGCTTTTGAA--ACTTTATTAACGAGGTGGTGGTTGTGCAAAT---G 2117 Query 13872 CAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| |||||||||||||| | ||| ||||| | ||| | ||| |||||||| || | Sbjct 2118 CACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAG 2177 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 || ||||||||||| |||||||| |||||| | || | | |||| || || || || Sbjct 2178 ACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAA 2237 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 ||||| || || || ||||| || || | || ||| |||| || | || Sbjct 2238 GATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGAATCGGATT------C 2291 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||||||| |||||| || | |||||| ||||| | | ||| | ||| | Sbjct 2292 AATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACTTCCAAAGCGTG 2351 Query 14111 AAATAAATATTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || | | ||||| ||| || | || | | || |||||||| || | ||| Sbjct 2352 GAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACA--TACGTATCAATCAGAAGAGAATAG 2409 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 |||| ||| || || ||||| || || || || || || || ||||||||| Sbjct 2410 GTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGGA 2469 Query 14229 CATTGTACTTCCGAGTA-AAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 |||| |||| || || ||| | || |||| |||||||| || ||||| || || Sbjct 2470 TATTGAACTT-CGTTTACAAAATTCTCTGCCAGGTTTTCATTCACAATACCGTCTGATGC 2528 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG---TTTTTT 14344 |||||||| || || || | ||| ||||| |||| ||| ||||| || || || || Sbjct 2529 AGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCTTATTGTT 2588 Query 14345 CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGC 14404 ||| || |||||||||| | ||| | ||| || | ||||||||||| || | Sbjct 2589 CCAGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTGCTTCCAT 2648 Query 14405 TTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14448 ||| |||||| |||| || || | | | |||||| |||| Sbjct 2649 TTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAA 2692 >seq195 Length=24554 Score = 107 bits (118), Expect = 2e-18 Identities = 360/551 (65%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| || ||| | |||||||| | ||| ||||| || || ||||| | | Sbjct 23291 CAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGA 23232 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| | || ||||| || | ||| || || | |||| || || || || ||||| Sbjct 23231 CCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGG-AGCAGAAGGAGCCAGAGAAGAA 23173 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG-CTTTTTTGTTCG 14049 || ||||| |||| || ||||| | | || ||| | | || | | | Sbjct 23172 GATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGTC 23113 Query 14050 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT 14109 | | ||| || ||||| | | ||| || || | | | || || ||||| ||| Sbjct 23112 ACA-CCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGCAC 23054 Query 14110 TAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATA 14167 | ||| ||||||||| || | ||||| |||| || ||||| |||| ||| Sbjct 23053 GCAGCAAAAGGTCCTTCTCTACAGCGTCCTTGA--TGTACGTGTCAATGAGTAGCGAATA 22996 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG- 14226 | || ||||| ||||| || ||||| ||||||||||| || || || | |||||| | Sbjct 22995 GACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTTCGGG 22936 Query 14227 -ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14285 ||| || ||||| | || | ||||| |||||||| || || |||||||| Sbjct 22935 AACC--TGCACTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCACTG 22878 Query 14286 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14345 |||||||| || || | | | || ||||||| |||| | | |||| |||||| Sbjct 22877 GCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTTTTTC 22818 Query 14346 CAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14405 ||||| | || | ||||| | || ||| | |||||||| || ||||| Sbjct 22817 CAATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTCAGCT 22758 Query 14406 TTTTTATACAT 14416 || || ||||| Sbjct 22757 TTCTTGTACAT 22747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479514886832600