Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1997 241 1e-58 seq195 122 8e-23 >seq1997 Length=5797 Score = 241 bits (266), Expect = 1e-58 Identities = 593/885 (67%), Gaps = 32/885 (4%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| |||||||||||| || || || |||||||| | | || || | Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||||||||| || ||||| | || || ||||| | |||| |||| ||||| ||| Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||| || | | ||| || | ||||| | |||||| | ||||| || |||| Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 13548 TTTTACAGGAATTATATTA-GTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | || |||| | ||| |||| ||||||| |||| ||| | ||||| | | Sbjct 2004 GCTCACCGGAAG-AGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGA 2062 Query 13607 TAATCT-TAATAATGTCATTAGAAGGAGGATATTTTAGATGTT-------TAAAAATTAA 13658 | ||| |||| || | || ||| | |||| || || | |||| Sbjct 2063 TT-TCTGTAATTCTGGCTTTTGAA--ACTTTATTAACGAGGTGGTGGTTGTGCAAATG-- 2117 Query 13659 ACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717 ||| |||||||||||||| | ||| ||||| | ||| | ||| |||||||| || | Sbjct 2118 -CACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAA 2176 Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGA 13777 || ||||||||||| |||||||| |||||| | || | | ||||| ||| || || | Sbjct 2177 GACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAA 2236 Query 13778 ATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG 13837 | ||||| || || || ||||| || || |||| ||| |||| || | | || Sbjct 2237 AGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGA-----ATCGGATTC 2291 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 | ||||||||| |||||| || | |||||| ||||| | | ||| | || | Sbjct 2292 A-ATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACTTCCAAAGCGT 2350 Query 13898 TGAATAAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 ||| | || ||||| ||| || | || | | || |||||||| || | ||| Sbjct 2351 GGAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACA--TACGTATCAATCAGAAGAGAATA 2408 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGA 14015 |||| ||| || || || || || || || || || ||| || ||||||| | Sbjct 2409 GGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGG 2468 Query 14016 CCATTGTACCTCCGAGTA-AAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 |||| | || || || ||| | ||||||| ||||||||| |||||||| || | Sbjct 2469 ATATTG-AACTTCGTTTACAAAATTCTCTGCCAGGTTTTCATTCACAATACCGTCTGATG 2527 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAG---TTTTT 14131 | |||||||| || || || | ||| ||||| |||| ||| ||||| || || || | Sbjct 2528 CAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCTTATTGT 2587 Query 14132 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 |||| || | |||||||| | ||| | ||| || | ||||||||||| || | Sbjct 2588 TCCAGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTGCTTCCA 2647 Query 14192 CTTTTTTATACATTACCCATATTTCTTTATATAATATAGGaaaaa 14236 ||| |||||| |||| || || | | | |||||| |||| Sbjct 2648 TTTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAA 2692 >seq195 Length=24554 Score = 122 bits (134), Expect = 8e-23 Identities = 363/551 (66%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| || ||| | |||||||| | ||| ||||| || || ||||| | | Sbjct 23291 CAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGA 23232 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 13778 || ||||| | || ||||| || | ||| || || | ||| ||| || || || ||||| Sbjct 23231 CCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGG-AGCAGAAGGAGCCAGAGAAGAA 23173 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATG-CTTTTTTGTTTG 13837 || ||||| |||| || ||||| | || || ||| | | || | | | | Sbjct 23172 GATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGTC 23113 Query 13838 ATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 | | ||| || ||||| | | ||| || || | | | || || || || ||| Sbjct 23112 ACA-CCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGCAC 23054 Query 13898 TGAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 | ||| | ||||||||| || | ||||| |||| || ||||| |||| ||| Sbjct 23053 GCAGCAAAAGGTCCTTCTCTACAGCGTCCTTGA--TGTACGTGTCAATGAGTAGCGAATA 22996 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG- 14014 | || ||||| ||||| || ||||| ||||||||||| || ||||| | |||||| | Sbjct 22995 GACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTTCGGG 22936 Query 14015 -ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTA 14073 ||| || || || | || | |||| ||||||||| ||||| |||||||| Sbjct 22935 AACC--TGCACTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCACTG 22878 Query 14074 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTC 14133 |||||||| || || | | | || ||||||| |||| | | |||| |||||| Sbjct 22877 GCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTTTTTC 22818 Query 14134 CAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCT 14193 ||||| | || | ||||| | || ||| | |||||||| || ||||| Sbjct 22817 CAATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTCAGCT 22758 Query 14194 TTTTTATACAT 14204 || || ||||| Sbjct 22757 TTCTTGTACAT 22747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478376192907960