Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1997 275 8e-69 seq195 197 2e-45 seq451 196 6e-45 >seq1997 Length=5797 Score = 275 bits (304), Expect = 8e-69 Identities = 820/1248 (66%), Gaps = 39/1248 (3%) Strand=Plus/Plus Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 |||||| ||||| || || | || || || |||||||| |||||||| | ||| || Sbjct 335 CGCATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAGATTCCAGAATTTTTTC 394 Query 71877 CCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTATTGTGTA 71934 ||| | ||| ||||| || | || | | |||| || || || || ||| Sbjct 395 CCAAAGTTCTCTTGCCTTAATGGTTTT--TCTTCCTCTGCCCTGTTCTTCATAAGAAGTA 452 Query 71935 TATAATCG-TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 || || || ||| || || || || || || | | ||| || ||||| || ||||| Sbjct 453 TA-AAGCGCTTCAAATTCTTCACCGTAAATATCATAAAGTCCCGGGCATTCGTTTGGACA 511 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 |||||| | ||| ||| || | || |||||||| || | || | | |||| | Sbjct 512 CATCAACGTCCATGTAGAATCTTCCTGAACACGTTTCATGAACAAGTCCGAAGTCCACAT 571 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 || | |||| ||| | | | || || ||||| || || || || || || Sbjct 572 GGCAAAGAATAAATCACGCGCACGCATTTCTTCTTTTCCATGGTTTTTCTTCAGGTCAAG 631 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 ||| | | |||||||| ||||| | ||| | || || || | | ||| ||||| Sbjct 632 GAAATCAAAAATATCAGCGTGCCATGTTTCGATATAGATAGCAAAACTTCCTTTGCGTTT 691 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 ||||||||| |||| || | |||||| | ||| |||| | |||||| |||| ||| Sbjct 692 TCCTCCTCCCTGGTCTACATAACGAGCGGTATCATTGAAAACACGCAACATCGGAACAAT 751 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT 72293 || || || | || || || ||| ||||||| || ||||||||| ||| || Sbjct 752 TCCGTTTGACGTTCCGTTTGTTCCGCGGATATAGGAACCCGTGGCACGAACATTATGGAT 811 Query 72294 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 72353 ||| || || ||||| || ||| || || ||| || | | |||| |||||| || Sbjct 812 TGAAAGCCCGATTCCTCCAGCCGATTGTGAAATTTTGGCTGTTTGCTTTAGCGTATCGTA 871 Query 72354 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 72413 || || || ||||| || ||| ||| || || || ||| ||||||||| | Sbjct 872 AATTCCGTCGATACTGTCGTCCTGCATTGCCAGAAGGAAGCAGGAAGACATTTGCGGTTT 931 Query 72414 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAG 72473 |||||| ||||| ||||| || || | || |||||||| | || | |||| || Sbjct 932 TGGAGTTCCGGCATTGAATAACGTTGGCGTTGCATGCGTAAAGAACTTCTTGGACATCAG 991 Query 72474 ATTGTACGTCT-CAATAGCTGATTCTATATCCCATT--GATGTATTCCTACCGCGACACG 72530 | || || | ||||| ||| || | | |||| ||| ||||| || || ||||| Sbjct 992 GTCATAAGTTTCCAATA-CTGCATCCAGGT--CATTCAAATGGATTCCAACGGCAACACG 1048 Query 72531 CATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTT 72590 ||| ||||| || || |||||||| || || || ||||||||| | || || || Sbjct 1049 CATCAACATGTGTTGTGGTCTTTCCACAATTTTTCCATTTATTTTTAGCAGATACGAACG 1108 Query 72591 TTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACC 72648 ||||| || ||||| || ||||| | ||| ||||| |||| | |||||| | | Sbjct 1109 CTCCAACGTCTTAAATCCGAAATAATCGTAGTTGAAA--TCTCTATTGTAAATTACATGG 1166 Query 72649 GAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-----TGAAATAA 72703 |||| | | | || || | || | ||| || ||||| ||||| || Sbjct 1167 GAATCCAAAAAAGCTGCATTTTCCTGAATCA----CATTGT-ATACTTCTTCTGAAAGAA 1221 Query 72704 TCGGAGAATGTTTCCCAT---TTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCAC 72758 |||||| || | || || | ||||| |||||| |||| | || | |||| Sbjct 1222 GCGGAGA---TTCCTGATTGGTTCTTGGATTCACATAG--AAATACATTTCTTTCATCGT 1276 Query 72759 TTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAG 72818 ||| || |||||| || | |||||| || ||||| | ||||| || || || | Sbjct 1277 TTCTGAGAACGATTTTTTGGTATTCTTGTGAAGGTTTGAAATTGCTATCCTTGCTGCCAA 1336 Query 72819 AATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTC 72878 ||||||||| ||||| | || | ||||| |||||||||| ||| |||| Sbjct 1337 CTGGGCATAATCCGGATGGGCAATTGTCATTGCTGCTGCGGTTTCTGCTGCAAGATTGTC 1396 Query 72879 CAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAAT 72938 ||| ||| ||||| || |||| ||| | || | |||||| ||| |||| ||| | Sbjct 1397 CAACTCTGAAGTTGTAACACCATCATACAACCCCTCGATAACGCGCATTGCTACTTTTAC 1456 Query 72939 AGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTT 72998 ||||||| | |||| ||| ||||| || ||||||||| |||| | | ||| || || Sbjct 1457 CGGATCTACAAGATC---GTTCAAGCCGTAGCATAATTTTTTAATTCTATCCGTAATCTT 1513 Query 72999 ATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAACAT 73046 ||||||||| || || | | || | || |||||| ||| |||| Sbjct 1514 ATCAAACATTACCGGCTCTCTGTGACCGTCTCTTTTAACTACATACAT 1561 Score = 178 bits (196), Expect = 2e-39 Identities = 593/907 (65%), Gaps = 47/907 (5%) Strand=Plus/Plus Query 41764 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAA 41823 |||||| ||| || ||||| || | ||||||||| ||||| || || || | || Sbjct 1815 AACTCCAGCTTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAA 1874 Query 41824 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA 41883 || || | ||||| |||||||||||||| | | ||||| | | || | |||| || Sbjct 1875 AGAGATCATATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAA 1934 Query 41884 TTC-AGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCA 41942 ||| | ||| ||||| || | | ||||||| ||| | |||| | | |||| Sbjct 1935 TTCTACTAAT-AATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCA 1993 Query 41943 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATA----GAG--- 41995 |||| || | | || ||||||| | || | ||||||| ||||||| ||| Sbjct 1994 TTCCAATTAAGCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCT 2053 Query 41996 --ACCGCG---TCTGTTATAATAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAA 42049 ||| | ||||| || | | | || | ||| || || ||||| | Sbjct 2054 GTACCAGGATTTCTGTAATTCTGGCTTTTGAAACTTTATTAACGAGGTGG------TGGT 2107 Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||| ||| || ||| ||||| || || | || ||||| | ||| ||||| Sbjct 2108 TGTGCAAATGC---AC-TGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCA 2163 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 || ||||| || || || ||||| | ||||| ||||| | |||| | ||||| ||| Sbjct 2164 TTTGAAAAAGTAAGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAAT 2223 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAA 42226 | ||| || || |||||||||||||| || ||||| ||||| ||||| || || || Sbjct 2224 GCTCCTGAGAAAAAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGAA 2283 Query 42227 CCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 ||| ||| ||||| ||| |||||| || || || || || | || | Sbjct 2284 TCGG---ATTCA---ATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAAT 2337 Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACT--ATCTTTAACATATGTATCGA 42344 ||| | || | || || | || ||||| | || |||||| ||||| ||||| | Sbjct 2338 ACTTCCAAAGCGTGGAAAAGCTGGTCCTTTTC--TGCTTCATCTTTTACATACGTATCAA 2395 Query 42345 TCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 42404 ||| |||| ||| |||| || || || || || || || |||||||||||| Sbjct 2396 TCAGAAGAGAATAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAA 2455 Query 42405 ATCTGGCCTCGGTAACCTGTACTTC-TGTACAAAATCGTTCAGCTAAATTTTCGTTCACT 42463 || | || || | | || ||||| | |||||||| || || | ||||| ||||| Sbjct 2456 ATTTAGCTTCCGGATATTGAACTTCGTTTACAAAAT-TCTCTGCCAGGTTTTCATTCACA 2514 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGT 42523 || ||||| || |||||||| || || | |||||| ||||||||||| || || Sbjct 2515 ATACCGTCTGATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTA 2574 Query 42524 GTTAATTTA---TTCCAATCATTGAT--ATCTTTAGATATATCTACTTCTTCTACCGTCC 42578 | | ||| ||||| || |||| ||| | | ||| | |||||| | |||| Sbjct 2575 TTCAGCTTATTGTTCCAGTC--TGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCC 2632 Query 42579 AAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAA 42638 |||| |||||| || |||||| | ||| |||||||| | || || ||||||| Sbjct 2633 AAAAACTTGCTTCCATTTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAA 2692 Query 42639 TAACAAA 42645 | || || Sbjct 2693 TCACGAA 2699 >seq195 Length=24554 Score = 197 bits (218), Expect = 2e-45 Identities = 405/595 (68%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||| | || || || ||| |||| ||||||||| | ||| || | || || |||| Sbjct 23299 ACATGAGGCAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAA 23240 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | |||| || ||||| || ||||| || || ||||| || || || ||| || || ||| Sbjct 23239 AGCTGAGACCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGA-GCAGAAGGAGCCA 23181 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCACT 42234 || |||||||| || || |||| || || |||| ||| | |||| | || || ||| Sbjct 23180 GAGAAGAAGATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACA 23121 Query 42235 GTCATGTATC--CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || | ||||| | |||||| |||| ||||| || ||||| || || || || Sbjct 23120 CGCGGGTCACACCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCA 23061 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 |||||| | | | || || || | || || | || || || || | || Sbjct 23060 ATGGCACGCAGCAAAAGGTCCTTCTCTACAGCGTCCTTGATGTACGTGTCAATGAGTAGC 23001 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||| | || || |||||||| || || || |||||||| ||||||||||| | || Sbjct 23000 GAATAGACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCT 22941 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGT 42470 |||| |||||| ||||| | | || ||||| || | ||||| ||||| || || | Sbjct 22940 TCGGGAACCTGCACTTCGTTGCTGAA--GTTCATGGCCAGGTTTTCATTCACAATGCCAT 22883 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 ||||||||||||| || || | ||||| || ||||| | |||| || | | Sbjct 22882 CACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGT 22823 Query 42531 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTT 42590 | |||||||| || || || | | ||| | || || |||||||||| || || | Sbjct 22822 TTTTCCAATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCT 22763 Query 42591 CTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | || || || ||||| | ||||| ||||| | ||||| ||||| | ||||| Sbjct 22762 CAGCTTTCTTGTACATCTGCCAGACATCATTCTCCTGAATCGGGAAGAGTACAAA 22708 >seq451 Length=16219 Score = 196 bits (216), Expect = 6e-45 Identities = 481/725 (66%), Gaps = 6/725 (1%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATT-GTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 || || || |||||||| ||| | || | |||||| ||| || ||||| | ||| Sbjct 8744 TCAAATTCATCTCCCCA-GCACTCGTAGAGACCAGGAGCTTCGTTTGGACAAAACAAACT 8802 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||||| |||| | | ||||||||||| || ||||||| ||||| ||||| ||| Sbjct 8803 CCACTTGCCATTACTTTCCACTCGTTTCATGAACAGATCAGATATCCATAGAGCGTAAAA 8862 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 | || | | || ||| || | || ||| ||| |||||||||||| | | Sbjct 8863 CAAGTCACGCGCTCGGTGCAGTTCACTGCCGTGATTTTTTCGGAGATCGAGGAACTCAAA 8922 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 | || | |||||| ||||||||||| || || | || ||||| ||| || Sbjct 8923 CACGTCTGCATGCCATGGTTCCAAGTAGATTGCAAAGGAACCTTTGCGTTTACCTCCACC 8982 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || || | || | ||| |||| ||| | || | |||||| || || ||||| ||||| Sbjct 8983 TTGGTCCACATACCGAGCCGTGTCGTTAAACACGCGCAACATGGGGATGATACCGTTGGA 9042 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAAT--TGATAGA 72300 | || || || || ||| ||||| | || || |||||| || |||| Sbjct 9043 AGACCCGTTAGTACCACGGATGTAGCTGTTCGTAGCTCGGATATTGTGCATGCTGATC-- 9100 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || ||| || ||||| | || ||| | || || ||||||||||| || Sbjct 9101 CCAATACCTCCCGCCCACTTTGAGATACAAGCACATTGCTTCAATGTATCATAGATTCCT 9160 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || |||||| |||| ||||| |||||| ||| | ||| | || ||| Sbjct 9161 TCAATTGAATCATCTTGCATGGCAAGTAAAAAACACGAAGATAATTGCGGCCGTGGAGTG 9220 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || |||||||| || || || | || || ||||| | |||| ||||| | | |||| Sbjct 9221 CCAGCATTAAACAACGTGGGCGTCGCATGGGTAAAGAACTTTTGAGACATCAATTCGTAC 9280 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 ||||| | ||||| || || | | | ||| || || | || || ||||| | ||| Sbjct 9281 GTCTCTAAAGCTGCTTGAATGTTGCTCTTATGAATCCCAAGAGCAACGCGCATAATCATT 9340 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| |||| |||||| | ||| ||| | || | ||| | | |||| ||| Sbjct 9341 TGCTGGGGTCGTTCAACCACTTTGCCATTCACGCGGAAAAGGTAACCTCTCTCCAGTGTT 9400 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 ||||| ||||| || | ||| |||||| || |||| ||| || |||| || | || | Sbjct 9401 TTAAACCCAAAGTAATCGTACTCAAAGTCCCGGTCGTGAATGATTGCCGAGTTTAATTCA 9460 Query 72661 TCCTT 72665 ||||| Sbjct 9461 TCCTT 9465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670841054799640