Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq32362 105 7e-18 seq28136 89.7 5e-13 seq14623 89.7 5e-13 >seq32362 Length=298 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | |||||| || | |||| ||||||||| || || ||||| |||||| | Sbjct 232 CCACCACGCAGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCC 173 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | || || || |||||||||||| | || || | |||||||| || || Sbjct 172 AGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGA 113 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||||| | || | ||| || | | || || Sbjct 112 ATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAACC 53 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| ||||| || || || ||||| |||||| Sbjct 52 TCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCATA 5 >seq28136 Length=407 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || || ||||| || ||||||||||| || |||| || | ||||| | || || || Sbjct 208 GTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCA-TCTTCCAACTGCTTGCC 150 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| | |||||||||||||| ||||| || || ||||||||||| ||||| || Sbjct 149 CGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTT 90 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | || || || ||| ||||| | || | |||||||| |||| || Sbjct 89 CACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGT 30 Query 143167 TTTTACGAATATTTGCAT 143184 |||||||| || ||||| Sbjct 29 CTTTACGAAGATCTGCAT 12 >seq14623 Length=969 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || ||||||||| | || | ||||| || || || ||| Sbjct 230 GTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCAGCTGCTTTCCA 171 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||||||| || || || || || |||||||| || || |||||| ||| Sbjct 170 GCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTTTGCCTTT 111 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||||| ||| | ||||||||||| | ||| Sbjct 110 ACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTT 51 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 50 TTGACGAAGATTTGCAT 34 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||| | || | ||| | || ||||| ||||| || ||||| || || || | Sbjct 479 AAACGGAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGG 420 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||||||||| || || || ||| | |||||||||||||| || || || || ||||| Sbjct 419 CCGTCTTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCC 360 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| || || ||||| | || | || |||| | || ||||| | || Sbjct 359 TTGTCCTGGATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTT 300 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||||| || |||| ||||| ||||| || ||||| Sbjct 299 ATCGTCTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506789165190480