Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq195 105 1e-17 seq451 104 3e-17 seq1969 102 1e-16 >seq195 Length=24554 Score = 105 bits (116), Expect = 1e-17 Identities = 147/203 (72%), Gaps = 10/203 (5%) Strand=Plus/Plus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGGCATGAACTGCAA 125716 || || || |||||| | || ||||| || || ||| | || |||||||||| | Sbjct 23365 ATCGAGCACGAGTTTGTGTGTGACTCCCTCCCTGTTGAGC-TCATCGGCATGAACTCAAC 23423 Query 125717 GCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCG 125776 ||| |||||| ||||||| ||||| ||||| || ||||| |||||| | ||||| | Sbjct 23424 GCTCATGTGCCAGTACATCGAGTTCGTGGCTGACCGTCTGCTGTAC----TCATTGGGGG 23479 Query 125777 C----AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGG 125832 ||||||||| ||| |||||| || || || | ||| || || ||||| ||| Sbjct 23480 TGTCTAAGATTTACCACGTCAAGAACCCGTTCGACTGGATGGACATGATCTCACTTCAGG 23539 Query 125833 GTAAGACCAACTTTTTCGAGAAG 125855 | ||||||||||| || |||||| Sbjct 23540 GCAAGACCAACTTCTTTGAGAAG 23562 >seq451 Length=16219 Score = 104 bits (114), Expect = 3e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || ||||| || | ||| || | | || ||| | || || | || Sbjct 7809 TACAAGACCGTGTGGGAAATCAAGCAAAAGTCGGTCTTGGACATGTCGGCTGATCGTGGC 7750 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| ||||||||||||| ||||| | || ||||||| || || |||| Sbjct 7749 GCTTACATTTGCCAGAGTCAATCGCTCAATATTCACATTGCCGATCCGACGATCAGTAAA 7690 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 | || || || || || || |||||||| ||||||||||||||||||||||||||| || Sbjct 7689 CTCACATCTATGCATTTCTATGCATGGAAAAAGGGCCTCAAGACGGGCATGTACTATATG 7630 Score = 100 bits (110), Expect = 4e-16 Identities = 310/476 (65%), Gaps = 8/476 (2%) Strand=Plus/Minus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 ||||||||||||| ||||| || ||||| ||||| || |||| | || ||||| | Sbjct 8951 TCTACTTGGAACCATGGCATGCAGACGTGTTTGAGTTCCTCGATCTCCGAAAAAATCACG 8892 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || |||| | ||||| | ||||||||||| || || ||| | | ||| |||||| Sbjct 8891 GCAGTGAACTGCACCGAGCGCGTGACTTGTTTTACGCTCTATGGATATCTGATCTGTTCA 8832 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 |||| || || | |||| | ||||| | | || || || | || |||| Sbjct 8831 TGAAACGAGTGGAAAGTAATGGCAAGTGGAGTTTGTTTTGTCCAAACGAAGCTCCTGGTC 8772 Query 97090 TGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC 97149 | | ||| |||||||| || || |||||| || ||| | || ||| | ||||| | Sbjct 8771 TCTACGAGTGCTGGGGAGATGAATTTGAGACCCTCTACGAAACGTATGAGAAGGAGGGAC 8712 Query 97150 G-ATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTA 97208 | || |||||| || |||| | | ||||| |||||| || || ||| | Sbjct 8711 GTGCTCGCAAGACGA-TCAATGCGCAGCAGTTGTGGTTTGCCATCTTGGACGCACAGATT 8653 Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 ||||| || || | || || |||||||| | | ||||| || ||| || | Sbjct 8652 GAGACGGGGGTGCCCTTTATGCTTTACAAGGACGCGGCCAATCGTAAGTCCAATCAGCAG 8593 Query 97269 CACTTGGGCACCATCAAGGGCTCC---AATCTGTGCACGGAAATTGTAGAGTACGCCTCT 97325 | | ||||| ||| | ||| || ||||| || | | |||||| | ||| Sbjct 8592 AATCTTGGCACGATC---CGATCCAGTAACTTGTGCTGTGAGGTGATGGAGTACACGTCT 8536 Query 97326 CCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGTAGA 97381 ||||||||| || || ||| |||| || || |||||||||||||| || Sbjct 8535 CCGGACGAGGTTGCGGTGTGCAACTTGGCGTCAGTGGCGCTGCCCAAGTTTGTGGA 8480 >seq1969 Length=5862 Score = 102 bits (112), Expect = 1e-16 Identities = 198/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 || ||||| || || | |||| ||| | | | ||||| ||||| ||| | | || Sbjct 2436 ACGAATCCTACTGACCGCCGGATTGTACTTTCGGCTTGGAACCCTGCCGATCTCAAAGAA 2377 Query 70250 ATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGT 70307 ||||| ||||||||||| ||| |||| | |||||| ||| | | | ||||| | ||| Sbjct 2376 ATGGCGCTACCACCGTGCCACATGTTCTG-TCAGTTCTACGTAGCA-GATGGTGAGCTGT 2319 Query 70308 CATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAA 70367 | ||| ||||| ||| || ||||||||||| || || || || ||||||||||| | Sbjct 2318 CGTGCCAGATGTACCAGCGGTCAGCCGACATGGGACTTGGCGTGCCATTTAACATTGCCA 2259 Query 70368 GCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCG 70427 |||| | | |||||| || | || || | || || ||| | | |||| Sbjct 2258 GCTACGCGCTTCTGACGCGTTTGGTAGCGCAAGTGGTAGGGCTAAAACCAGGCAAGTTTA 2199 Query 70428 TACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCA 70474 |||| ||||| || || ||||||||||| || ||| | |||||| Sbjct 2198 TACATGTAATTGGTGATGCACACGTGTATTTGAACCACGTGGAGCCA 2152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740729993713640