Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq29522 104 4e-17 seq17901 95.1 2e-14 seq15331 95.1 2e-14 seq34590 91.5 3e-13 seq15025 91.5 3e-13 seq13418 91.5 3e-13 seq11171 91.5 3e-13 seq31058 89.7 9e-13 seq2904 84.2 4e-11 >seq29522 Length=371 Score = 104 bits (114), Expect = 4e-17 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 272863 GCTAGTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCT 272922 |||| || |||||| ||| || ||||||||||| ||||||||||||||||||||||||| Sbjct 286 GCTAAAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCT 227 Query 272923 GCTCTAACCAACTGAGCTA 272941 ||||||||| ||||||||| Sbjct 226 GCTCTAACC-ACTGAGCTA 209 >seq17901 Length=771 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 273269 AATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTAC 273328 |||||||||||||| |||| ||||||||||||| ||| ||||||| ||| ||||||| Sbjct 297 AATGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTAC 356 Query 273329 CA-ACTGCGCTACACTCCG 273346 || |||||||||||||||| Sbjct 357 CAGACTGCGCTACACTCCG 375 >seq15331 Length=923 Score = 95.1 bits (104), Expect = 2e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 273271 TGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 273330 ||||||| || | | || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 119 TGGTCGGGGTAGAGGGATTCGAACCCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA 178 Query 273331 -ACTGCGCTACACTCCG 273346 ||||||||| || ||| Sbjct 179 GACTGCGCTATACCCCG 195 >seq34590 Length=233 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||| ||||| | ||||||| |||||| ||||||||||| |||||||||||| Sbjct 233 TGGTGGGCCCACCAGGATTCGAACCTGGAACCAAGGGATTATGAGTCCCCTGCTCTAACC 174 Query 272932 AACTGAGCTATAGGCCC 272948 |||||||||||||| Sbjct 173 -GTTGAGCTATAGGCCC 158 >seq15025 Length=942 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||| ||||||| ||||||| ||||| ||||||||||| ||||||||||| Sbjct 105 TGGTGGGCCCACCAGGACTCGAACCTGGAACCAAAGGATTATGAGTCCTCTGCTCTAACC 46 Query 272932 AACTGAGCTATAGGCCC 272948 | |||||||||||||| Sbjct 45 -ATTGAGCTATAGGCCC 30 >seq13418 Length=1064 Score = 91.5 bits (100), Expect = 3e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 273356 TGGTGCCCGAAGTCGGATTCGAACCGACAAGACCGTA--GCCGGAAGATTTTAAGTCTTC 273413 |||||||| || |||| |||||||| |||| || | ||||| ||||||||||||| | Sbjct 437 TGGTGCCCCGAGCCGGAATCGAACCGGCAAGGCCTTGCGGCCGGCAGATTTTAAGTCTGC 496 Query 273414 TGTGTTTACCAATTTCACCATTCGGGC 273440 ||||||||||||||||||||| |||| Sbjct 497 TGTGTTTACCAATTTCACCATCGGGGC 523 >seq11171 Length=1283 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 272867 GTATATGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTC 272926 |||| ||||||||||| ||||||||| |||||| ||||||||||| |||||| Sbjct 347 GTATTTGGTGGGCCCACACAGACTTGAACTGTGGACCAACGGATTATGAGTCCGCTGCTC 288 Query 272927 TAACCAACTGAGCTATAGGCCCT 272949 ||||||||||||||||||||||| Sbjct 287 TAACCAACTGAGCTATAGGCCCT 265 >seq31058 Length=331 Score = 89.7 bits (98), Expect = 9e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 272872 TGGTGGGCCCAGCAGGACTTGAACCTGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 272931 ||||||||||| ||||| ||||| |||||| ||||||||||| ||||||||||| Sbjct 250 TGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACC 191 Query 272932 AACTGAGCTATAGGCCC 272948 ||||||||||||||||| Sbjct 190 AACTGAGCTATAGGCCC 174 >seq2904 Length=4329 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 266721 TGGTGCCGCCACTCCGAATCGAACGGAGGACCTACGCATTACAAGTGCGTTGCTCTACCT 266780 ||||||||| ||||||||||||||| ||||||| ||||||| | ||||||||||| Sbjct 4095 TGGTGCCGCTTGTCCGAATCGAACGGACGACCTACTGATTACAAATCAGTTGCTCTACCG 4154 Query 266781 AGCTGAGCTATAGCGGCG 266798 | |||||||| ||||||| Sbjct 4155 A-CTGAGCTAAAGCGGCG 4171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896542345261360