Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004687.1 Length=156102 Score E Sequences producing significant alignments: (Bits) Value seq19878 89.7 5e-13 seq1633 87.8 2e-12 seq6617 86.0 6e-12 seq6008 84.2 2e-11 >seq19878 Length=680 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 116616 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 116675 ||||||||||| || || | | ||| |||||||| |||| || || |||||| Sbjct 285 GGCCCGGGCCGCGGTTCGGGTGCTGGTTCGCTGGTGGCCTATGTACTGAAGATCACCGAT 226 Query 116676 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 116735 |||||||| | ||||||||| ||||||||||||| ||||||| || || | Sbjct 225 CTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCC 166 Query 116736 TTCCCCGACATCGACGTCGACTTC 116759 | |||||| |||||||||||||| Sbjct 165 ATGCCCGACTTCGACGTCGACTTC 142 >seq1633 Length=6651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 99153 ATGCGAAGGTAGCTCAGCTGGCAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 99212 ||||||| |||||||| ||| ||||||| ||||||||||||| ||||||||||| ||| Sbjct 6534 ATGCGAAAATAGCTCAGTTGGTAGAGCGCGACCTTGCCAAGGTCGAGGTCGCGGGTTCGA 6593 Query 99213 AACCCGTTCTTCGCTC 99228 |||||| ||||||| Sbjct 6594 GCCCCGTTTTTCGCTC 6609 >seq6617 Length=2135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 117669 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 117728 |||||||| ||| ||||||||||||||||| |||| | |||||| ||| ||||| ||| Sbjct 1569 ACCTACGGGATCATGGTCTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 1628 Query 117729 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 117785 | | | | ||||| ||||| | |||| | ||| |||||||||||| | ||| Sbjct 1629 TACTCGCTGGGCGGCGCCGACCTCTTGCGCCGTGCCATGGGCAAGAAGAAGGTCGAG 1685 >seq6008 Length=2324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 117669 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 117728 |||||||| ||| |||| |||||||||||| |||| | |||||| ||| ||||| ||| Sbjct 197 ACCTACGGGATCATGGTGTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 138 Query 117729 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAG 117779 | || || || | ||||| |||||| || ||| |||||||||||| Sbjct 137 TACAGCCTCGGTGGTGCCGACATGCTGCGCCGGGCCATGGGCAAGAAGAAG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499176548503280