Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq1495 129 4e-25 seq9754 93.3 3e-14 seq28760 91.5 1e-13 seq7611 89.7 4e-13 seq1674 86.0 4e-12 >seq1495 Length=7139 Score = 129 bits (142), Expect = 4e-25 Identities = 238/342 (70%), Gaps = 13/342 (4%) Strand=Plus/Plus Query 99223 TCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACTGGC-AG 99281 ||| | ||||||||||| ||||| || | ||||||| || | || || ||||| | Sbjct 6622 TCCTCGTCGGAGACGAAGGCGCCGTGGACGCGGATGG-GCAGACCGGTGCCGCTGGCCAT 6680 Query 99282 AAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCG 99341 | | | ||| ||||| |||| || |||||| || || ||| ||||| || Sbjct 6681 GTAGAGCATGTCGCCCATGCCCAGCAGCGCCTCGGCGCCCATCTGGTCGAGGATGGTGCG 6740 Query 99342 GCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAG 99401 ||| ||| | ||| | | ||| | | ||||| || | |||| |||||| || Sbjct 6741 GCTGTCGATCTTGGAGCCGACCGAGAAGGCGATCCGCGTCGGGATGTTGGCCTTGATCAG 6800 Query 99402 GCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGC 99461 ||| || | |||||||||| || |||||||||||||||| || || |||||||| || Sbjct 6801 GCCGGTGATCACATCCACGCTCGGACGCTGCGTCGCCAGGATCAGGTGGATGCCGGCGGC 6860 Query 99462 ACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCAC-- 99517 ||||||||||| || | |||| | || ||| |||| | | |||||| |||| Sbjct 6861 CCGCGCCTTCTGGGCCAGGCGGGCGATCAGTT--CCTCGATC---TTCTTG--CCCACCA 6913 Query 99518 CCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGT 99559 ||||||| ||||| || || || || | || |||||||||| Sbjct 6914 CCATCATCAGATCGGCCAGCTCGTCGATGACGACCACGATGT 6955 >seq9754 Length=1476 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 99387 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 99446 |||| |||||| ||||| || | ||| ||||| || || |||||||| ||||||| || Sbjct 1159 GTTGGCCTTGATCAGGCCGGTGATCACGTCCACCGACGGGCGCTGCGTGGCCAGGATCAG 1218 Query 99447 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 99482 || ||||||||||||||||||||||| || | ||| Sbjct 1219 GTGGATGCCGGCCGCACGCGCCTTCTGTGCCAGGCG 1254 >seq28760 Length=390 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 99670 TCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTGAGCTCGACACAT 99729 || || |||||| | || || || |||||| | |||||| | |||| || | ||| Sbjct 179 TCGGTGACCACGTCCGCCAGCAGATGCGGGATATCCTTGTACATGCTGAGTTCCAG-CAT 237 Query 99730 -TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTAGAGCAGCGAAAC 99788 ||||| ||||||||||| | | | |||| ||||| ||||||||||||||| | Sbjct 238 CTTGGGATCGATCATGATCATGCGGCACTGATCCGGGGTGAGCCGGTAGAGCAGCGACAG 297 Query 99789 CAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGCCACCAGCAGATG 99848 | ||| |||||| | ||||||||||| ||||| | || || || |||||||| Sbjct 298 GATCATGCAGTTGAGCCCGACCGACTTGCCCGAACCGGTGGTCCCGGCGACGAGCAGATG 357 Query 99849 CGGCATC 99855 ||||||| Sbjct 358 CGGCATC 364 >seq7611 Length=1885 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/173 (72%), Gaps = 7/173 (4%) Strand=Plus/Minus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 |||||| ||||| || | || ||||| || || |||||||| ||||||| || || || Sbjct 632 CTTGATCAGGCCGGTGATGACGTCCACCGACGGGCGCTGCGTGGCCAGGATCAGGTGGAT 573 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTG 99510 |||||| || |||||||||||||| | |||| | || ||| |||| ||| |||||| Sbjct 572 GCCGGCGGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CCTCGACC---TTCTTG 518 Query 99511 TAGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGG 99563 | | |||||| | || |||| ||| || | | | |||||| |||| Sbjct 517 CCGACGATCATCATCATGTCGGCGAATTCGTCTATGAAGATGACGATGAAGGG 465 >seq1674 Length=6551 Score = 86.0 bits (94), Expect = 4e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 99376 CGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTC 99435 |||| ||| | |||| |||||| ||||| || | ||| |||||| ||| ||||| || Sbjct 3756 CGCGTGGGAATGTTGGCCTTGATCAGGCCGGTGATCACGTCCACGCTGGGGCGCTGGGTG 3697 Query 99436 GCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 99482 ||||||| || || ||||||||||| || |||||||| || | ||| Sbjct 3696 GCCAGGATCAGGTGGATGCCGGCCGCGCGGGCCTTCTGGGCCAGGCG 3650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354489592836654