Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq28136 129 4e-25 seq14623 91.5 1e-13 >seq28136 Length=407 Score = 129 bits (142), Expect = 4e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 15166 GGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCC 15225 ||| || ||||| || ||||||||||| ||| | | | ||||| || || ||||| Sbjct 209 GGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGCTTGCC 150 Query 15226 AGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTT 15285 || |||||| |||||| |||||| || || ||||||||||| |||||| ||| Sbjct 149 CGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTT 90 Query 15286 TACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 ||| | || || |||||||| |||| || |||||||| ||||| || || ||||| || Sbjct 89 CACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGT 30 Query 15346 TTTTACAAAAATTTGCATATT 15366 ||||| || || ||||| || Sbjct 29 CTTTACGAAGATCTGCATCTT 9 >seq14623 Length=969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| |||| | | || | || | |||||| ||||| || |||||||||||| Sbjct 718 TGCCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGG 659 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | || || | || || || || | || ||||| || ||||| | Sbjct 658 CAAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGG 599 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| || |||||||| || ||| ||| ||| | || || ||||| | || | Sbjct 598 GAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATCCGAGCTCTCAA 539 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| || || || || || || ||||| |||||||| |||||| Sbjct 538 CTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCATA 489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || | ||| | ||| || ||||| || || ||||| || Sbjct 946 TGCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAG 887 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || ||| | ||||| | ||||| ||||| | |||| || || ||||| | Sbjct 886 CAAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 827 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| || || ||| ||| | || ||||| || | || | Sbjct 826 GGATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCA 767 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || |||||||| |||||||| || ||||| ||||| || ||||| Sbjct 766 CTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362022328757199