Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq14623 91.5 1e-13 seq25614 89.7 4e-13 >seq14623 Length=969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||| || || ||||||||||| || || | ||| | | || || |||||| Sbjct 920 TGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCTTCGAGCTGT 861 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || || | |||||| || ||| | ||| || ||||| || || Sbjct 860 TTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGTATCTTA 801 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | ||| || || | || |||| ||| | |||||||| |||||||| Sbjct 800 GCCTTCACATTGTCGATGGTGTC-CGAGCTCTCCACTTCCAAAGTAATGGTCTTACCTGT 742 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || ||||||||||| || ||||| Sbjct 741 TAGGGTTTTGACAAAGATCTGCAT 718 >seq25614 Length=477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||| || || |||||||||||||||||||| |||| || || | ||||| Sbjct 61 CACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCCTC 120 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| || | ||||| |||||||| || ||| | || || ||||| Sbjct 121 CAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTG 180 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGTTTCGACGGTAATGGTTT 19010 || || || || | | | | || || | || ||| ||| | ||||| || | Sbjct 181 GATCTTGGCCTTGACGTTGTCAATGGTGTC-CGAGCTCTCAACTTCCAATGTAATTGTCT 239 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || |||| ||||| ||||| |||||||| Sbjct 240 TTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414393235435366