Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq19013 104 9e-18 seq21139 95.1 4e-15 >seq19013 Length=720 Score = 104 bits (114), Expect = 9e-18 Identities = 322/490 (66%), Gaps = 20/490 (4%) Strand=Plus/Plus Query 53018 GACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTT 53077 ||||| || ||||| |||||| || || || || ||||||||||||| | || || Sbjct 113 GACCGGGTCAACCGGCAGTTCCGCGCCGAGCGGCCCAACCAGCTGTGGGTCTCGGACTTC 172 Query 53078 ACTTACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTT-TGC 53136 || |||||| || |||||||||| ||||| ||||||||| | | || ||||| || Sbjct 173 ACCTACGTCTCGACCTGGCAGGGCTGGGTCTACGTGGCGTTCGTGGTGGACGTGTTCAGC 232 Query 53137 CGGATACATTGTGGGGTGGCGGGTCTCATC--GTCCATGGAGACGACATTCGTGCTGGAT 53194 ||| ||| ||||| |||| | | | | || ||| | || |||||||| || Sbjct 233 CGG-CGCATCGTGGGCTGGC--GCCAGAGCAGTTCGATGCACACCGAGTTCGTGCTCGAC 289 Query 53195 GCACTGGAGCAGGCGTTATGGGCCCG-TCGACCGTCC--------GGCACGGTCCATCAC 53245 || ||||| ||||| | | | ||| | ||| || ||| ||| |||||| Sbjct 290 GCGCTGGAACAGGCCCTGTACGACCGCAAGCCCGGCCAGACGCAAGGCCTGGTGCATCAC 349 Query 53246 AGTGATAAAGGTTCTCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGA 53305 ||| || || || || | || | ||||| |||| || || ||||| Sbjct 350 TCGGATCGTGGATCGCAATACCTGTCCATCCGCTACAGCGAGCGTCTGGCTGAGGCCGGC 409 Query 53306 TTACTGGCATCAACAGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATC 53365 | | | ||| || | |||||| || |||||||| |||| |||| |||| Sbjct 410 ATCGAGTCGTCAGTGGGCTCCAAGGGCGACAGCTACGACAACGCCCTGGCCGAGACCATC 469 Query 53366 AATGGTCTTTACAAAGCGGAGGTAATACAC---CGTAAGAGCTGGAAAAACCGTGCA-GA 53421 || || || ||||| || ||||| || ||| || | |||| || ||| ||| | Sbjct 470 AACGGGCTCTACAAGGCCGAGGTGATCCACCGGCGCGGGCCCTGG-AAGACCAAGCAGGC 528 Query 53422 AGTGGAACTGGCCACACTCACGTGGGTGGACTGGTATAACAATCGACGATTGCTGGAAAG 53481 |||||||||||||| || ||||||| |||| ||| | | |||||| |||| Sbjct 529 GGTGGAACTGGCCACGCTGGAATGGGTGGCTTGGTTCAACCACCACCGATTGATGGAGCC 588 Query 53482 GCTGGGCCAC 53491 ||||||| || Sbjct 589 GCTGGGCTAC 598 >seq21139 Length=628 Score = 95.1 bits (104), Expect = 4e-15 Identities = 259/392 (66%), Gaps = 11/392 (3%) Strand=Plus/Plus Query 52362 TTTTCCCCCGAAGTCCGTCAGCGGGCGATTCGTATGGTTCTGGAAA---GTCAGGATGAA 52418 ||||| ||||| || ||| |||| || |||| ||||| ||||| |||| || | | Sbjct 87 TTTTCACCCGAGGTGCGTGAGCGCGCCGTTCGCATGGTGCTGGAGCACCGTCACGA-GCA 145 Query 52419 TATGACTCACAGTGGGCGGCAATTTGTTCCATTGCCCCAAAGATTGGCTGTACGCCGGAG 52478 | ||||||||||| || | ||||| ||| ||||| ||||| |||| || Sbjct 146 CCCG--TCACAGTGGGCTGCTGTCGAGTCCATCGCCGGCAAGATCGGCTGCGTGCCGCAG 203 Query 52479 ACTCTGCGTGTCTGGGTTCGCCAGCATGAGCGGGATACCGGGGGCGGTGATGGAGGGC-T 52537 || |||| |||||| |||||||| ||| ||| |||| ||| || ||| | Sbjct 204 ACGCTGCACACCTGGGTCCGCCAGCACGAGGTCGATGCCGGCAA----GATCGAAGGCGT 259 Query 52538 CACCACCGCTGAACGTCAGCGTCTGAAAGAGCTGGAGCGTGAAAATCGTGAACTGCGCCG 52597 | | || | || ||||| | || ||||||||||| || || || ||||||||| Sbjct 260 CTCGACGTCCGAGGCGCAGCGCATCAAGGAGCTGGAGCGAGAGAACCGCGAACTGCGCAA 319 Query 52598 CAGTAACGATATCCTTCGCCAGGCTTCCGCTTATTTTGCGAAGGCGGAGTTCGACCGCCT 52657 ||||| ||||| | ||| ||| | ||| || |||||||| ||||||||| Sbjct 320 GGCCAACGAGATCCTGAAGCTGGCCAGCGCGTTTTTCGCCCAGGCGGAGCTCGACCGCCG 379 Query 52658 CTGGAAAAAATGATGCCACTGCTGGATAAGCTGCGTGAGCAGTACGGGGTCGGACCGCTA 52717 | || ||| | | | | || ||| || |||||| |||||||| || | Sbjct 380 CATCAAGTCCTGAAGGCCTTCGTCGACCAGCATCGCCAGCAGTTCGGGGTCGAGTCGATC 439 Query 52718 TGCAGCGAACTGCATATTGCCCCGTCAACGTA 52749 || ||| |||| || |||||||| |||| Sbjct 440 TGTCGCGTCATGCAGATCGCCCCGTCGGCGTA 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185176217896056