Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq28136 95.1 8e-15 seq14623 87.8 1e-12 seq25614 84.2 1e-11 >seq28136 Length=407 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 || || ||| | ||||| || |||||||| || || |||||||| | || | || || Sbjct 227 CCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCC 168 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 || ||||| ||||| || |||||| | |||||||||||| | || || |||||||| Sbjct 167 ATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTT 108 Query 33274 TTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || | | | ||| || || | | || || ||| || || ||| || | || Sbjct 107 GTCCTGGATTTTGGCC---TTCACATTGTCGATTGTATCGCTGCTTTCAACTTCTAAGGT 51 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || || ||||| || || |||||||| || ||||| || Sbjct 50 TATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTT 9 >seq14623 Length=969 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 14/214 (7%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG----TCATCCA 33221 ||||| || || || || || ||||||||||| | ||| | ||| | || |||| Sbjct 237 ATGCAGCGTGGATTCCTTCTGGATATTGTAATCGG-CAA---GGGTTCGGCCATCTTCCA 182 Query 33222 ATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GC 33278 ||||||||| |||||| | ||| || ||||||| ||| |||||||| || || | Sbjct 181 GCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGA 122 Query 33279 TAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTT 33338 | | |||| |||| | | ||| ||||| | | || || ||||| || || | Sbjct 121 TTTTTGCCT---TTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCT 65 Query 33339 TTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || ||||||||||| ||||| |||||||| || Sbjct 64 TGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 >seq25614 Length=477 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||||| || | ||||||||||| ||||| || ||||| ||||||||||||| | Sbjct 44 CCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 103 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || |||| ||||| ||| || || | | |||||||| | ||| Sbjct 104 AAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 163 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || | | | ||| || || | | ||| ||||| | | | Sbjct 164 ATTCCTTCCTTGTCCTGGATCTTGGCC---TTGACGTTGTCAATGGTGTCCGAGCTCTCA 220 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || |||| || || || ||||| || || |||||||| || ||||||||| Sbjct 221 ACTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCATG 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318639527360022