Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq8149 248 2e-61 seq1131 192 1e-44 seq8333 190 4e-44 seq20278 80.6 6e-11 >seq8149 Length=1767 Score = 248 bits (274), Expect = 2e-61 Identities = 449/650 (69%), Gaps = 24/650 (4%) Strand=Plus/Minus Query 16347 CCGAGGTGAAAGCCTACCGCCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGG 16406 |||||| | ||||||||| || | ||| ||||||| ||||||||| | | ||||| | Sbjct 1744 CCGAGGCCCAGGCCTACCGCGAGCACTTCGGCCAGCGCGAGCTGATGCTGCTGTGGCCCG 1685 Query 16407 ATTTCCTCGCATGGGATACGGTCGCCAGTACCACCGCCACCGCGTATGCCACCGC--CCG 16464 ||| || ||| || || | |||||| ||| | | | | || | ||| Sbjct 1684 GCTTCAAGGCGCTGGA--------CCTGT-CTACCGCCGCCGTGCAGGACGCCTCACCCG 1634 Query 16465 TG-------CGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGC 16517 || | ||||| |||||||| ||||||||||||||||||||||| || |||| Sbjct 1633 TGGCCTACGCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGC 1574 Query 16518 TGTCCAACGTCGGGGTGAACGGTGTTACCGGCATCA-GCGCG-TCCGTATTCTGGGATTT 16575 |||||||||| | || || ||| |||||| ||||| | | ||| |||| | Sbjct 1573 TGTCCAACGTGCCGTTGTCGGGCGTTCTGGGCATCTCGCGCGATGTGCATT--GGGACCT 1516 Query 16576 GCAGGAGTCCGGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACAACGCTGATTCG 16635 ||| ||| ||||| || | | | || ||| || | ||| |||| |||||||| | Sbjct 1515 GCAAAGCCCCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCA 1456 Query 16636 CCGTGACGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGATCCGCTGTTCCTCTT 16695 | | || |||||||||||| || |||||| | || |||||||| ||| Sbjct 1455 GAGCCAGGGCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTT 1396 Query 16696 TGAAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTG 16755 || | | |||||||||||||||||||||||||| ||||| |||||||| | || Sbjct 1395 CGAGTCCAGCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTG 1336 Query 16756 GGCGGTGGACAAGCCCAT-CACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATG 16814 ||| |||||||||||||| |||| || | ||| | |||||| | || |||||||| Sbjct 1335 GGCCGTGGACAAGCCCATGCACCCCAGC-CTGGTCAAGGACATCCTGGAAGGCATCAACA 1277 Query 16815 CCAAATTCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCG 16874 |||| ||||| || ||||| | ||||| ||| |||| | | ||||| | || Sbjct 1276 CCAAGTTCCGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGTACGACG 1217 Query 16875 AAGAGTCCAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATA 16934 || | |||||| | | || ||||||||||| || ||| | ||||||||||| | Sbjct 1216 AAACGGTCAACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTACA 1157 Query 16935 CCCCGGTGCCTCCTCTTGAAAATCTGACCCTGCGCCAGCGCATTACCGAT 16984 | || |||||||| || || | ||| | ||||||||||| |||||| Sbjct 1156 CGCCCGTGCCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq1131 Length=8710 Score = 192 bits (212), Expect = 1e-44 Identities = 792/1230 (64%), Gaps = 42/1230 (3%) Strand=Plus/Plus Query 1291 GGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCCTC 1350 ||| |||||| ||||||||| || || ||||||| ||| || |||||||||| || Sbjct 3894 GGCATGCATGCACGCCCAGGCCAGATCCGCGTGGCCGGCCTCATCGCTGCGGCCCGCGGT 3953 Query 1351 ATAGGTGGCGCTGCGTCCGCTGC--TG--GTCATGGTCTTGCGGATAGCCATAAACGA-G 1405 |||||| |||| ||||| || |||| ||||||||| |||||||||| | Sbjct 3954 GTAGGTGAT-CTGC---CGCTGGGATGCCGTCAGCACCTTGCGGATGGCCATAAACGCCG 4009 Query 1406 CTGGTGATGTCGGTGG---CGCTGACGTCATATTCCAGACAGCCACGGCGGATGACGTCT 1462 ||| | || ||| ||||| | ||| | || | ||| || ||| || | Sbjct 4010 CTGCC-ACATCCGTGCACCCGCTGTC--CATCTCAAAG-CGGCCCTTGCCGATCACCTGC 4065 Query 1463 TTTGCCTTGAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCGCGCGCGGC 1521 || ||||| ||||||| |||| | |||| ||| |||| || | ||||| Sbjct 4066 TTGGCCTTCAGCACCAG-GCGGCTCTTCACCTCCACGCTGTACTGGTAGGCCCGCGCCTG 4124 Query 1522 GGGATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACC 1581 ||| ||||| | ||| ||| | ||||| || || ||| ||| || || || Sbjct 4125 CGGAAAGAACTTGATGACGTTCTGATAGACGCCCTGCCCCAGCCCGCTGGTGTCGATGCC 4184 Query 1582 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGAGTGGCAAA 1641 |||||| |||||| | || | |||| |||||||| || ||||| | || Sbjct 4185 GATGTAGGTCACGTTGAACTTCTGCGTGATCGCGCGGATGGCCTCTGCCTGCTGCTCGAA 4244 Query 1642 GTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGG 1701 |||| || || |||| || || | || | | ||| ||||| || | | || ||| Sbjct 4245 GTCCGCCCCCTTGAACTGCTGCCGGTGCAGCAGCCGGAACTTGCCGCCCGGCGCCCGCGG 4304 Query 1702 CGGTGCCAGTACCACGCATCCGGCGCTG--TCGCCACGGTGTGACGGGTCGTAACCAATC 1759 |||||| | ||||| || | | ||| | ||||| ||| || |||||||| || | | Sbjct 4305 CGGTGCAATCACCAC-CAGC-GCCGCAGCATCGCCGGTGTGCGATGGGTCGTACCCCACC 4362 Query 1760 CAGACCGGGCGGGAGCCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC 1819 || ||||| | || |||| | |||||||||| | || |||| | ||| Sbjct 4363 CACACCGGAAAGTGCGCGTACGGCCGCGTGGCAAACGGCTTGCAATCCGCCCACGCCTCC 4422 Query 1820 -AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAATACCGACGCCTTGTCGTC 1878 ||| |||| |||||||||| |||| |||| || || ||| | || ||||||| Sbjct 4423 CAGC-TGTCCACCATGCAGCCCTGCATTTCCTTGAGCGTGAACAGGCTAGCGCTGTCGTC 4481 Query 1879 AACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTG 1938 | || || |||||| ||||||| || || || | |||| |||| |||| Sbjct 4482 GATGAACTCGCACATGTACAGGTTGGCGAACTCTTCCGGGCTGCTTTCTTCCCGCAGCTC 4541 Query 1939 CTCAATGTCGAACAATGTGCAGCCACCTTTCAGG------GCGTCCTCAATGGTGACAAT 1992 || |||||||||| ||||||| |||| |||||||| || || || | Sbjct 4542 GTCGATGTCGAACAGGTTGCAGCC------CAGGCGTGCCGCGTCCTCGATCGTCACCAC 4595 Query 1993 CTGCCGCCACTGGCCGTCCGCACAGAGAAGACCTCCGGCAAGGGCGTTATGACTGACGTC 2052 | ||||||| || || || | | | | || ||| || || || || ||||| Sbjct 4596 GTCGCGCCACTTGCGATCGGCCCCGCGGATGCCGCCGCGCAGCGCTGCGTGGCTCACGTC 4655 Query 2053 GATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCGGACCAGAA 2112 ||| | | ||| | |||| || || ||| | ||| |||||| Sbjct 4656 GATGGTGATGGCCTCGCCCTTGCTG---CGGCCTTTGTTGCGCTCCGTGCCGTTCCAGAA 4712 Query 2113 CGGATAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACT 2172 |||||| || || |||| || | |||||||||||||| || ||| |||| || | Sbjct 4713 CGGATACGCCTCATGCGACATGGCCGACGGGGTGGAGAAGTACGTCTTGCGCCAATGCTT 4772 Query 2173 CTGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAAT 2232 || | ||||| | | |||||||| || |||| || | ||| || | Sbjct 4773 GTGCGTCGCCATGGCCGCGGCCACCTTGTTGAGCTGGCGAAAGCCCGACACCCAAAAGAA 4832 Query 2233 CTCGTCGACGTACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAGTTGGTGCCGAGAAA 2292 ||| |||| ||| | ||||||| | | | ||| || || || | |||||||| | ||| Sbjct 4833 CTCATCGAAGTAGAAGTCGCCGCTGCGCCCCTGCGCCGTCTTCGCATTGGTGCCCAAAAA 4892 Query 2293 AATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAAC 2352 ||| | || ||||| ||| || || ||||| ||| |||| || ||| | || Sbjct 4893 GTGCAGCTCCGCACCGTTCGA---CAGCACGATAGGGTCGCCGCTCAGCTCCACGCCCAC 4949 Query 2353 CAGCCGGGCAAAGGCGATGATGTATTCACGGAACACATACGCCTGCGTTTTACTGGCCGA 2412 ||||| ||||||||| | ||||| |||| | |||||||| || || || Sbjct 4950 CAGCCCGGCAAAGGCCAGCATGTACGTCTTGAACTGGTGCGCCTGCGCCTTTGATGCAGA 5009 Query 2413 CAGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATA 2472 || |||||||| || | || | | |||||| | |||||||||||||| ||| || Sbjct 5010 AAGGAAAATCTGATTGCGCCCCTCCGTGATGGCGCGTATCAGCGCCTCGCGGGCAAAGTA 5069 Query 2473 AAACGTCGCGCCAATCTGGCGGGATTTCAG 2502 | || || || ||||| || || ||||| Sbjct 5070 CCAAGTGGCCCCGATCTGCCGCGACTTCAG 5099 Score = 95.1 bits (104), Expect = 3e-15 Identities = 110/147 (75%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 3450 ATCGCGATGAACAAGGCCGCGCAGAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTT 3509 |||| | |||||||||||| |||||| |||| ||||| || || || | || | || Sbjct 6146 ATCGAGCTGAACAAGGCCGGCCAGAAGCTCTACACCTCCATCGAGATCAACCCCGAATTC 6205 Query 3510 GCCAACACCGGCAAATGTTATCTGGTGGGGCTGGCCGTCACCGATGACCCGGCAAGCCTC 3569 ||| |||||||| | || || ||||| |||||||||||||| |||| || ||||| Sbjct 6206 GCCGACACCGGCGAGGCGTACCTCGTGGGCCTGGCCGTCACCGACAACCCCGCCAGCCTG 6265 Query 3570 GGCACGGAATACCTGGAATTCTGCCGC 3596 ||||| || ||||| ||| ||||| Sbjct 6266 GGCACCGAGGCGCTGGAGTTC-GCCGC 6291 >seq8333 Length=1724 Score = 190 bits (210), Expect = 4e-44 Identities = 473/704 (67%), Gaps = 52/704 (7%) Strand=Plus/Minus Query 16129 CGCGCAGACCGTTTCCAATATCATCGGCACCACTGACGAAAACGGTCAGTACACCGGACT 16188 |||| | |||| |||| ||||||||||||| ||| ||| ||| |||||| || Sbjct 1517 CGCGGAAACCGCAACCAACGTCATCGGCACCACCACCGAGGCCGGCCAGCGCACCGGCCT 1458 Query 16189 GAAGGCCCTGCTGGCGGCAGAGTCGGTAACCGGTGTTAAACCGCGTATTCTCGGCGTGCC 16248 | |||||||||||||||| ||| | | || || || ||||| || |||||| ||| Sbjct 1457 GCAGGCCCTGCTGGCGGCCGAGGGGCAATTGGGCGTGAAGCCGCGCATCATCGGCGCGCC 1398 Query 16249 GGGACTGGACACCAAAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGCGC 16308 || ||||||||||| | ||||| || || |||| || || ||| |||| ||||| Sbjct 1397 CGGCCTGGACACCAAGGCCGTGGCCGTGGCCATGGCGTCCGTGGCGCAGCAGCTCCGCGC 1338 Query 16309 TTTCGGGTA--TATCAGCGCATGGGGCTGTAAAACCAT-----TTCCG------AGGTGA 16355 ||| || | || || | || || ||| || | ||| ||| Sbjct 1337 CTTCACCTACGTTTCGGCCCGCGGCGCC----AACGATGCCTATGCCGCCACCAAGG--- 1285 Query 16356 AAGCC---------TACCGCCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGG 16406 ||||| |||||| | ||| | ||||| ||| ||||||| || ||||| Sbjct 1284 AAGCCGCCGTGCTCTACCGCGGCGAGTTCGGGCAGCGCGAGGTGATGGTGATGTGGCCCA 1225 Query 16407 ATTTCCTCGCATGGGATACGGTCGCCAGTACCACCGCCACCGCGTATGCCACCGCCCGTG 16466 | ||||| || ||||| | || | ||| | | ||| |||| || Sbjct 1224 ACTTCCTGGCCTGGGACGGCGAGGCGGGCGAGGCCGTGGAGGTGCCCGCCGTCGCCTATG 1165 Query 16467 CGCTGGGTCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACG 16526 | ||||| |||||||| || | || |||||| |||||||| || | | |||||| Sbjct 1164 CCCTGGGCCTGCGCGCCAAGCTGGATCAGGAGATTGGCTGGCACAAGTCCATTTCCAACA 1105 Query 16527 TCGGGGTGAACGGTGTTACCGGCATCA-GCGCGTCCGTATTCTGGGATTTGCAGGAGTCC 16585 | | ||| ||||| || ||||||| ||||| || |||| || ||||| || || Sbjct 1104 TGGTGGTCAACGGCGTGGAAGGCATCACGCGCGAT-GTGTTCTTCGACCTGCAG-AGCCC 1047 Query 16586 GGC-ACCGATGCTGACCTGCTTAACGAGTCAGGC-GTCACAACGCTGATTCGCCGTGACG 16643 ||| | |||||| | | || ||| || ||| ||||| ||||||||||| || |||| Sbjct 1046 GGCCAGCGATGCGGGCTACCTGAAC-AGCAAGGAAGTCACCACGCTGATTCGGCGCGACG 988 Query 16644 GTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGATCCGCTG--------TTCCTCTT 16695 | | ||||||||||||| || |||||| || | |||| | ||| ||| Sbjct 987 GATACCGCTTCTGGGGTTCGCGCACCTGC---GAGG--CCGCCGGCGGAAAGTTCGCCTT 933 Query 16696 TGAAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACAT-GT 16754 ||| ||||||||||||||| ||||||||||||||||| || || || |||||| | || Sbjct 932 TGAGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTCGT 873 Query 16755 GGGCGGTGGACAAGCCCAT-CACCGCAACGCTGATTCGCGACAT 16797 | | ||||||||||| |||| | ||||| | |||||||| Sbjct 872 CTTC-ATCGACAAGCCCATGCACC-CCTCGCTGGTGCGCGACAT 831 >seq20278 Length=663 Score = 80.6 bits (88), Expect = 6e-11 Identities = 44/44 (100%), Gaps = 0/44 (0%) Strand=Plus/Minus Query 22550 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGtttttttt 22593 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 175 GACACCATCCCTGTCTTCCCCCACATGATGTGGGGGTTTTTTTT 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104423112164628