Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq22275 114 1e-20 seq4502 113 5e-20 seq18532 105 7e-18 seq10597 105 7e-18 seq10324 91.5 2e-13 >seq22275 Length=587 Score = 114 bits (126), Expect = 1e-20 Identities = 176/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 6982 CGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATG 7041 || ||| ||||||| || ||| || || |||| |||||||| || |||||||| | Sbjct 180 CGTATCGCCCGGCTGCAAGAGCGCGAGGAAAACGGCCTGGTTCATCTGCGAACCGGAGTT 239 Query 7042 AGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTT 7101 || |||||||| || || ||| | ||||| | || || || || || || || | Sbjct 240 TGGCTGAACGTTGGCAAAGTTGACGCCGAACAGCTTCTTGGCGCGGTCGATGGCAAGCTC 299 Query 7102 CTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGC 7161 ||| |||| | ||||||||||||||| || ||||||||||| || ||||| Sbjct 300 TTCGGCAATATCGACGAACTGGCAGCCGCCATAATAGCGCTTGCCCGGATAGCCTTCAGC 359 Query 7162 ATACTTGTTGGTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTC 7221 ||| |||||||| | || || ||||| |||| | || || ||||| |||||| Sbjct 360 ATATTTGTTGGTCATGATCGAGCCCTGGGCTTCGAGCACGGCGCGGGACACGATGTTTTC 419 Query 7222 GGACGCAATCA 7232 || ||||||| Sbjct 420 CGAGGCAATCA 430 >seq4502 Length=2986 Score = 113 bits (124), Expect = 5e-20 Identities = 176/250 (70%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 6986 TCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGT 7045 || || |||| ||||| || |||| || ||||||| || || || || || || Sbjct 1086 TCGCCGGGCTCCAGGAACGCCAGGTACACGCCCTGGTTGGCCTGGCTGCCCGAGTGCGGC 1145 Query 7046 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7105 || ||||| ||| ||| | ||||| | || |||||| |||| ||||||||||| Sbjct 1146 TGCACGTTGGCGTGCGCGCAGCCGAACAGCGCCTTGGCACGCGCAATGGCCAGGTTCTCC 1205 Query 7106 ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATAC 7165 | ||||||| || |||||||||| || || || ||| ||||| ||||| || || Sbjct 1206 ACGGCATCGGCATTGGCGCAGCCGCCGTAGTAGCGCACGCCGGGATAGCCCTCGGCGTAT 1265 Query 7166 TTGTTGGTAAAAATAGAACCCTGTGCTTTCATAAC--ATCGTCTGACACATAGTTTTCGG 7223 |||||||| | | || ||||| |||| ||| || || || ||| | ||||||| Sbjct 1266 TTGTTGGTCAGCACCGAGCCCTGCGCTTCCATCACCGCACGGCT--CACGAAATTTTCGG 1323 Query 7224 ACGCAATCAA 7233 | |||||||| Sbjct 1324 AGGCAATCAA 1333 >seq18532 Length=742 Score = 105 bits (116), Expect = 7e-18 Identities = 187/266 (70%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 6913 CTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACAT 6972 ||||||||| ||||| | ||| ||||| ||||| ||||||||| | ||| | ||| Sbjct 416 CTTGCCCGACGCATTGACCTTGGCACCGTGGGTGAGGTGGCCGCCGTGGGCCAGGCTCAT 475 Query 6973 AGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGA 7032 |||| | | |||||||||| ||| || || ||| || |||||||| || || || Sbjct 476 GCCGAGGATGGTGTCACCCGGCTGCAGCAGGGCGAAGTACACGGCCTGGTTGGCCTGCGA 535 Query 7033 ACCGGAATGAGGTTGAACGTTTGCGAAATT-GCAACTAAACAGTT-CTTTAGCACGCTCA 7090 |||| || || || ||||| || | | ||| | || ||| | ||| || || || Sbjct 536 ACCGCTGTGCGGCTGCACGTTGGCATAGTCCGCATCGAA-CAGCTGCTTCAGG-CGGTCG 593 Query 7091 ATTGCCAGGTTCTCG---ATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCC 7147 || ||||| | |||| || || || || ||||||| || || || || |||||| Sbjct 594 ATCGCCAGCTGCTCGGCGATGTCCACGTATT---CGCAGCCACCGTAGTAGCGCTTGCCC 650 Query 7148 GGATATCCCTCAGCATACTTGTTGGT 7173 || || || || || ||||||||||| Sbjct 651 GGGTAGCCTTCGGCGTACTTGTTGGT 676 >seq10597 Length=1360 Score = 105 bits (116), Expect = 7e-18 Identities = 181/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 6911 ATCTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAAGGAC 6970 ||||||||||| ||||| | ||| ||||| || || |||||||| | ||| ||| Sbjct 478 ATCTTGCCCGAGGCATTGACCTTGGCGCCGTGGGTCAGGTGGCCGCCATGGGCCAGCGAC 419 Query 6971 ATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGT 7030 || |||| | | || ||||||| ||| || || || || |||||||| || || Sbjct 418 ATGCCGAGGATGGTGTCGCCCGGCTGCAGCAGGGCGAAATACACCGCCTGGTTGGCCTGC 359 Query 7031 GAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCA 7090 || |||||||| || || ||||| ||| | | | || || | || |||| || Sbjct 358 GAGCCGGAATGCGGCTGCACGTTGGCGTAGTCCGCGCCGAAGAGCTGCTTCACACGGTCG 299 Query 7091 ATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGA 7150 || ||||| | |||| | ||| | | |||| ||||| ||||| || ||| ||| Sbjct 298 ATGGCCAGCTGCTCGGCCACGTCGACGTACTCGCAACCGCCGTAATAGCGCTTGTGCGGG 239 Query 7151 TATCCCTCAGCATACTTGTTGGT 7173 || || || || ||||||||||| Sbjct 238 TAGCCTTCGGCGTACTTGTTGGT 216 >seq10324 Length=1392 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 7013 ACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAAC 7072 || |||||||| || || || ||||| | || |||||||| || | | | ||| Sbjct 787 ACGGCCTGGTTGGCCTGGGAGCCGGAGTTGGGCTGAACGTTGGCTGCCTCGGCGCCGAAC 728 Query 7073 AG-TTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCC 7131 || ||||| | | || || || || || | ||||| ||||| | ||| |||||||||| Sbjct 727 AGCTTCTTGA-CGCGGTCGATGGCGAGCTGCTCGACCACATCGACGTTTTCGCAGCCGCC 669 Query 7132 ATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCCTGTGC 7191 ||| || || ||||| ||||| || || || ||||||||||| | || ||||| || Sbjct 668 ATAGTAGCGCTTGCCTGGATAGCCTTCTGCGTACTTGTTGGTGAGCTGGGAGCCCTGGGC 609 Query 7192 TTTCATAAC 7200 || ||| || Sbjct 608 TTCCATCAC 600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555116486840440