Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq32362 87.8 2e-12 >seq32362 Length=298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 8/257 (3%) Strand=Plus/Minus Query 19959 ATTTAAATATATTTTATCATTTTC------CTCCTCGTAACCTCAACACCAAATGTAGTG 20012 ||| |||||||| || |||||| | || || | | ||| || | || |||| Sbjct 261 ATTAAAATATATGTTGAGATTTTCAACACCCACCACGCAGACGCAAGACAAGGTGAAGTG 202 Query 20013 TAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCG 20072 ||||||| || || ||||| |||||| ||| |||| ||| |||| ||||| || | Sbjct 201 TAGATTCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCAG 142 Query 20073 CATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCA 20132 || | || |||||||| ||||| || | ||||| ||||| |||||| ||| | Sbjct 141 CAAATATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTCGCTTTTA 82 Query 20133 CCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGTT 20191 | | ||| | |||| || | || |||| || || || ||||| |||||||| Sbjct 81 CGTTATCAATCGTATCG-GAGCTCTCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGTC 23 Query 20192 TTGACAAAAATTTGCAT 20208 || ||||| || ||||| Sbjct 22 TTCACAAATATCTGCAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419405463540459