Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq12647 120 7e-23 >seq12647 Length=1134 Score = 120 bits (132), Expect = 7e-23 Identities = 276/402 (69%), Gaps = 23/402 (6%) Strand=Plus/Minus Query 11522 CCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACTGG 11581 ||||||||||||||||||||||||||||||||||||| || |||| | | |||| Sbjct 882 CCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGACCGGACGGC---CGAGCGCTGG 826 Query 11582 CAGGGCCAGCTCCCGCAC-AACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCGC 11640 |||||| | ||| || || | | || || || | || | | ||| | | | Sbjct 825 CAGGGCATGGCGCCGGACCAATCAGGGGA-CGCGCGC---TTTGTCGTGTTCACCGCTCC 770 Query 11641 GCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTATC---GCAAGGTCGACGG 11697 | || | ||||||||||| ||| ||||||||| ||| | ||||| |||| Sbjct 769 GGTGTGGGGTTTGCGCGCCCTGGCCAAGGTGCTGCTGAGCTACCAGCGCAAGC---ACGG 713 Query 11698 CCTGCGCACCGTCGAAT-CGCTGATCGCTCGCTGGGCGCCGTCCAACGAGAACGACACCC 11756 ||||||||| | || | || | |||| |||||||||||| ||| ||||||||||| Sbjct 712 CCTGCGCAC-GCCGGCTGCGATCATCGGCCGCTGGGCGCCGCCCACGGAGAACGACACGG 654 Query 11757 GCGCATATGCCACGGC-CGTGGCCCGAGCCATGGGGGTTCCGCCGCAGGCCGGCCTGCAC 11815 |||| || ||| || | |||||| | |||| || | | | | | | || Sbjct 653 GCGCCTACGCC-CGCCAGGTGGCCAAGGTGCTGGGTGTAGGGGTCAACGACACCATTGAC 595 Query 11816 ATGGACCAG---GACACCCTGGCCGC-CCTGGTGACCGCGATCATTCGGCACGAAAACGG 11871 || | ||| | || || || || | | || | || ||| | ||||||||||| Sbjct 594 CTGCAGCAGCCCGCAACGCT-GCAGCGCATCTTGCCGGCCATCGTCGCCCACGAAAACGG 536 Query 11872 GCAGCAGCCCTACAGCGCCGAGCAGATCGCCCAGGCCGTGCG 11913 ||||||||| ||||||||||||| ||||||| | |||||||| Sbjct 535 GCAGCAGCCGTACAGCGCCGAGCTGATCGCCGAAGCCGTGCG 494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120182858339814