Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1997 217 1e-51 >seq1997 Length=5797 Score = 217 bits (240), Expect = 1e-51 Identities = 509/759 (67%), Gaps = 27/759 (4%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||| |||||||| |||||||||||| || || |||||||| || | ||| || || | Sbjct 1824 TTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCAT 1883 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||||||||| || ||||| || ||| | || ||| |||||||||| ||| Sbjct 1884 ATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAA 1943 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||||||| | ||||| |||| ||| ||| ||||||| | ||||||||| ||||| Sbjct 1944 TAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAA 2003 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | || || | || |||||||| ||| | | |||| ||||||| || | | | || Sbjct 2004 GCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGAT 2063 Query 13099 GTCTCTTATTACG--TTCT-----CTAATGGAGGATTTGATAGATGCTTAAACATCATAC 13151 ||| | ||| | || | | || | || || | | || || || | Sbjct 2064 TTCTGTAATTCTGGCTTTTGAAACTTTATTAACGAGGTGGTGGTTGTGCAA-----ATGC 2118 Query 13152 A-TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 | |||||||||||| || | |||||||| | || | || |||||||| || ||| Sbjct 2119 ACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAGA 2178 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 |||||||| | || |||||||| | |||| | |||| | || | || || ||||| Sbjct 2179 CCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAAG 2238 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 |||||||| || |||||||| || |||| |||||| || | | | | || Sbjct 2239 ATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGAA------TCGGATTCA 2292 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAA-CGCAGTTCATATTTTCTATTGCGTT 13389 ||||| ||| ||||||| ||||||| |||| || | ||| ||| | |||| Sbjct 2293 ATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATA-CTTCCAAAGCGTG 2351 Query 13390 AAATAAATAAt--ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447 || | | | |||| | ||| ||| | ||| ||||| |||| | ||| Sbjct 2352 GAAAAGCTGGTCCTTTTCTGCTT--CATCTTTTACATACGTATCAATCAGAAGAGAATAG 2409 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT-CTGA 13506 |||| || ||||| |||||| |||||||| || || ||| || |||| | | || Sbjct 2410 GTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGGA 2469 Query 13507 TACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGC 13566 || ||||||||| ||| | ||||| | |||||| || || || ||||| || Sbjct 2470 TA-TTGAACTTCGTTTACAAAATTCTCTGCCAGGTTTTCATTCACAATACCGTCTGATGC 2528 Query 13567 AGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC 13605 |||||||||||| | || || || ||||| | ||| || Sbjct 2529 AGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTC 2567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430795727919678