Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq3451 122 8e-23 seq4977 114 1e-20 >seq3451 Length=3754 Score = 122 bits (134), Expect = 8e-23 Identities = 251/363 (69%), Gaps = 29/363 (8%) Strand=Plus/Minus Query 99422 GCTGGGCGTGCGCGCCCCAGAGCATGAACACCATCGGGCCGCCCTGCGCGCTCAGGCGGG 99481 |||| || | |||||||||||||||||||||| ||||| ||||||| |||| Sbjct 3018 GCTGCGCATAGGCGCCCCAGAGCATGAACACCA-------GCCCTTCGCGCTC--GCGGT 2968 Query 99482 CCAGCAC------CGCGTGCACCA-GCCGCC--CCCAGCCCAGGCTGGCGTGCGAGCCCG 99532 ||||| | |||| | | ||| ||||||| ||| ||||| ||| | Sbjct 2967 TGAGCACATCCACCACGTGGTCGGTGAAGCCTTCCCAGCCGCGGCCCTGGTGCGCGCCGG 2908 Query 99533 GCGC-CCCGCTCCGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAG 99591 | ||| || | ||| || || || |||||||||||||||||||| ||||||| Sbjct 2907 CCTTGCCCTCTTC-CACCGTCAGTACGGCATTGAGCAGCAGCACGCCGCGCTGCGCCCAC 2849 Query 99592 GCCTCCAGGCAGCCGTGCTGCGGCCGCGGGGTCCCGGGGAAGTTCT-TCTGCACGGCCGC 99650 | |||||||||||| | ||| |||||| | ||| || || ||| | || Sbjct 2848 GGGATCAGGCAGCCGTGGTCCGGGCGCGGGATACCG----AGATCGGTCTCGATCTCCTT 2793 Query 99651 GTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCG--CGGTTCACGCTGAAGGCCAGG 99708 |||||||||| | || ||||| | ||| |||||| |||| | || ||| |||| Sbjct 2792 GTAGATGTTCAGCAGCGACGGCGGCACCGGCACGCCGGGCGGTAC-CGA-GAAACTCAGG 2735 Query 99709 CCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGACGTCC 99768 || || ||||| ||| | | |||||| ||||||||||| ||||| || ||||| || | | Sbjct 2734 CCATGTGCCTGGCCGCGCCCGTGGTACGGGTCCTGGCCGAGGATCACCACCTTCACCTGC 2675 Query 99769 TCG 99771 ||| Sbjct 2674 TCG 2672 >seq4977 Length=2742 Score = 114 bits (126), Expect = 1e-20 Identities = 295/441 (67%), Gaps = 25/441 (6%) Strand=Plus/Minus Query 99358 GACAGCGGCGAGGGGTGGCTGTGCGTCAGCACGAGGTGCCGCTTCCCGGCCGCCCCAAAG 99417 |||||||||||||||||| || || ||||| ||||||| |||| | || Sbjct 2090 GACAGCGGCGAGGGGTGGTTGGAGGTGAGCACCAGGTGCCCGCGATCGGCAGGGATGAAC 2031 Query 99418 GCCCG------CTGGGCGTGCGCGCCCCAGAGCATGAACACCATCGGGCCGC---CCTGC 99468 | || ||| ||||||| |||||| ||||||||||||| |||||||| || | Sbjct 2030 ACGCGCTTGGACTGCGCGTGCGAGCCCCACAGCATGAACACCA-CGGGCCGCTCGCCCTC 1972 Query 99469 GCGCTCA-GGCGGGCCAGCACCGCGTGCACCAGCCGCCCCCAGCCCAGGCTGGCGTGCGA 99527 | | || ||||| | |||| ||| ||| || |||||||| || ||||| Sbjct 1971 GGCCACATGGCGG---ATCACCTCGTCGGTGAGCAGCTCCCAGCCCTTGCCCGCGTGGCT 1915 Query 99528 GCCCGGC-GCCCCGCTCCGCACGGTGAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCG 99586 | ||| | | ||| || | ||||||||| |||||||||||||||||||||| || Sbjct 1914 GGCCGCCTGGCCCTCTTC-CACGGTGAGGCCGGTGTTGAGCAGCAGCACGCCGTTCTTCG 1856 Query 99587 CCCAGGCCTCCAGGCAGCCG---TGCT-GCGGCCGCGGGGTCCCGGGG-----AAGTTCT 99637 |||| |||||| |||| ||| | || | ||| ||| | | || Sbjct 1855 CCCACTTGACCAGGCTGCCGCCCGGCTCGGGGAAGGTGGGGAACGGCGTATCCAGGTCGC 1796 Query 99638 TCTGCACGGCCGCGTAGATGTTCTGGAGGCTGGGCGGGATCGGAACGCCGCGGTTCACGC 99697 ||||| | | ||||||| | || |||||| | | | |||||| | ||| Sbjct 1795 GCTGCATCTCTTTGAAGATGTTGCGCAGCGAGGGCGGCAGCTGCACGCCGGGCGCCACCG 1736 Query 99698 TGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTGTGGTAGGGGTCCTGGCCCAGGATGACGA 99757 ||| |||| || | |||||| ||| ||| |||||| |||||||| ||||||||||| | Sbjct 1735 AGAACGCCAACCCCTCGGCCTGGCCGCGGCCGTGGTACGGGTCCTGCCCCAGGATGACCA 1676 Query 99758 CCTTGACGTCCTCGGGCGCCG 99778 | || ||||||||| || Sbjct 1675 CGCGCACCGCCTCGGGCGGCG 1655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440703336041640