Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq1466 381 2e-101 seq10062 165 3e-36 seq23830 132 2e-26 seq1840 132 2e-26 seq17070 116 2e-21 seq14555 114 5e-21 seq1293 95.1 5e-15 seq956 86.0 3e-12 >seq1466 Length=7219 Score = 381 bits (422), Expect = 2e-101 Identities = 648/933 (69%), Gaps = 20/933 (2%) Strand=Plus/Plus Query 25252 TGCCCTTCCGCCCGAACCGCGCGCAACGCCGGCTCCTGCGCCGCCTCTGGCACCGCAACC 25311 |||| || || || || |||||||| ||| || | |||| ||||||||||||||| Sbjct 3128 TGCCTTTTCGGCCCAATCGCGCGCAGAAGCGGTTCATCAGCCGGCTCTGGCACCGCAACA 3187 Query 25312 TGATCCTGAAGGCCCGCCAGCTCGGCTTTACGACCCTCATCTGCATCATCTGGCTCGACC 25371 | ||||||||||| || ||||||||||| || || || ||| |||| | ||||| |||| Sbjct 3188 TCATCCTGAAGGCGCGGCAGCTCGGCTTCACCACACTGATCGCCATCCTGTGGCTGGACC 3247 Query 25372 ACGCGCTGTTCAACGC-CAACAGCCGGTGCGGCATCATCGCGCAGGATCGGGAGACGGCC 25430 | ||||||||||| || | ||| || ||||||||||||||||| || || ||| ||||| Sbjct 3248 ATGCGCTGTTCAATGCGGATCAG-CGCTGCGGCATCATCGCGCACGACCGCGAGGCGGCC 3306 Query 25431 GAGGCGCTGTTTCGGGACAAGGTAAAGTTCGCCTACGACAACCTGCCCGAGGCGCTNNNN 25490 ||||| | || ||||||||||| || | ||||||||| ||||||||||||| | | Sbjct 3307 GAGGCCATCTTCCGGGACAAGGTGAAATACGCCTACGAGAACCTGCCCGAGGAGATCCGC 3366 Query 25491 NNNNNNATGCCGCTCGCCAACTGCACGAAGGCCGAGCTGTTGTTCGCCCACANNNNNNNN 25550 | || || || | | || || ||| | |||||||||| Sbjct 3367 GACCGCTTCCCCCTGGCACGCGATAGTGCGGTGGAACTGCTTTTCGCCCACAACAACAGC 3426 Query 25551 NNNNTCCGCGTCGCGACGTCCGTGCGCGGCGGCACGATCCACCGCCTGCACATCTCCGAG 25610 | ||||| || || ||| ||||| ||||| |||||| | |||||| |||||||| Sbjct 3427 AGCGTGCGCGTGGCCACCTCCATGCGCTCGGGCACCATCCACAGGCTGCACGTCTCCGAG 3486 Query 25611 TTCGGGAAAATCTGCGCCAAGTACCCGGACAAGGCGGCCGAAGTGGTGACGGGCTCCATC 25670 | || || |||| || | |||| ||||||| || ||| |||| ||||||||| Sbjct 3487 CTGGGCAAGATCTCGGCGCGCTTCCCGCACAAGGCCAAGGAGGTGATGACCGGCTCCATC 3546 Query 25671 CCGGCCGTGCCGAAGTCGGGCATTCTGGTCATCGAGTCGACGGCCGAGGGCCGCGAGGGC 25730 ||||||||||| | ||||||| ||||| |||||| |||||||| ||| | | ||| Sbjct 3547 CCGGCCGTGCCCACCACGGGCATCCTGGTGATCGAGAGCACGGCCGAAGGCGCCAACGGC 3606 Query 25731 GAGTTCTACAACATCACGATGCAGGCCGAGGCGATCGCGC-AGGCCGGCAAGCCGCTCAC 25789 ||||||||| || | | || || ||||| | || | | | |||| ||| | Sbjct 3607 GAGTTCTACCACCTGTCCCAGCGTGCGGAGGCCCT-GCACTACACGCACAAGAAGCTGAG 3665 Query 25790 GGCCCGCGACTACCGATTCCACTTCTTCCCGTGGTGGCAGGCGCCCGAGTACCGGATGGA 25849 | |||||||| || |||||||||| | |||||||||| |||| | ||||| ||||| Sbjct 3666 TCCGCGCGACTATCGCTTCCACTTCTATGCCTGGTGGCAGGAGCCCAACTACCGCATGGA 3725 Query 25850 CTCGGCCCACGTCATCATCAC---CGAGAAGGACCGGCAGTATTTCGAGACGATCGAGG- 25905 | ||| | ||| |||| |||| || || | |||||||| | |||||| Sbjct 3726 CGCGGGTCTGGTCCATGTCACGCGCGAGCAGCAC---GACTATTTCGACCAGGTCGAGGT 3782 Query 25906 CGAAGCACGGCATCACGATCGATGCCGAGCAGCGCGCATGGTACGTCGCCACGCGCGACG 25965 ||| | | | ||| |||||| |||||||| || ||||| || ||||| | || | Sbjct 3783 CGAGATGCAG-AGCACCATCGATCTGGAGCAGCGGGCCTGGTATGTGGCCACCCAGGAAG 3841 Query 25966 CCGACTTTTCCGGCAACGAGGAACGTATGTGGCAGGAATACCCGTCGACGCCCGACGAAC 26025 | ||||| ||||| || || ||||||||||| ||||| || ||||| | ||| Sbjct 3842 CGGACTTCCCCGGCGCGCCTGAGCGCATGTGGCAGGAGTACCCCTCCACGCCTGCCGAGG 3901 Query 26026 CGTTCAAGGTTTCGACCGAGGGCACGTACTACGCCCAGCAGCTCGCCGCG-GCGCGCAAG 26084 | ||| | |||| || |||| |||||||||| || | | |||| | || ||| Sbjct 3902 CATTCCAACAGTCGAGCGCGGGCCGGTACTACGCCAAGGCCATGGTCGCGCTCACG-AAG 3960 Query 26085 CAGGGGCGCATCAAGCCGTCCCTGCCTGTCCTGTTCAACGTGCCGTGCTTCACCTTCTGG 26144 | || | |||| | || |||| | ||| | ||||| || |||||||||| Sbjct 3961 CGCGGCGGTATCA---CCTCGGTGCCAGAGCTG---GATCTGCCGGTCTACACCTTCTGG 4014 Query 26145 GACATCGGCAACAGCGACGGCACGGCAATCTGG 26177 || ||||| | ||||| ||||| |||||| Sbjct 4015 GATATCGGGCGCGCGGACGGGACGGCCATCTGG 4047 >seq10062 Length=1426 Score = 165 bits (182), Expect = 3e-36 Identities = 289/420 (69%), Gaps = 20/420 (5%) Strand=Plus/Minus Query 32109 TCAGCATCGACGGCGACGACCACTACGTCTGTGTCATGTCCGAGTATCAGGCGACGGACA 32168 ||| ||||| |||| ||| |||| ||| || ||| | || |||||| ||| Sbjct 489 TCACCATCGCCGGCAGCGAGCACTTCGTGACCGTGATGCACCCGTTCCAGGCGCACGACC 430 Query 32169 TGCGCACCGCAG-CGGGCG---GCACGTGGATCGACTTCCAGAAGGNNNNNNNNNNNNNN 32224 ||||| | ||| |||||| ||| ||| | ||| ||||||||| Sbjct 429 TGCGCGTC-CAGACGGGCGAGGGCAGCTGGCTGGACATCCAGAAGGCGGCGGCCGCGGCG 371 Query 32225 NNNGGTCGGAACAACCCGATCTTCAAGGGCGGCCTCGGCATGATCAACAACGTCGTGCTG 32284 |||||| |||||||||||||||||| | ||| ||||||||| |||| | ||| Sbjct 370 GAAGGTCGGGACAACCCGATCTTCAAGGACAACCTGGGCATGATCGGCAACACGATCCTG 311 Query 32285 CACAAGCATCGCAA---CGTGATCCGCTTCAACGATTACGGCGCGGGCGCGAACGTCGAG 32341 |||||||| ||| ||| | || |||||||| |||||||| |||| ||||| Sbjct 310 CACAAGCA---CAAGTCCGTCGTGCGGTTCAACGACTACGGCGCCGGCGGCAACGTGCCC 254 Query 32342 GCAGCGCGTGCGCTGTTCATGGGCCGTCAGGCAGGCGTGATCGCCTACGG---CACGGCC 32398 || ||||||||||||||| ||||||||||||| || | |||| ||| | | Sbjct 253 GCCGCGCGTGCGCTGTTCCTGGGCCGTCAGGCCCTGGTCCTGGCCTTCGGTTCCGGTGGT 194 Query 32399 AACGGCCTCCGCTTCGATTGG---GAGGAAACGGTGAAGGACTACGGGAACGAGCCCGCC 32455 | |||||| |||||||| ||| |||| || | |||| |||| ||||| || Sbjct 193 AGCGGCCTGCGCTTCGACTGGTCCGAGGTCCCGCT---GGACCACGGCAACGACATCGAG 137 Query 32456 ATCGCTGCCGGTTTCATCGCCGGCATGAAGAAGGCTCGCTTCAACAACAAGGACTTCGGC 32515 ||| || || |||| |||||| |||||| | |||||||||| ||||||||||||| Sbjct 136 ATCTGCGCTGGCGCCATCTTCGGCATCAAGAAGACGCGCTTCAACAGCAAGGACTTCGGC 77 Score = 86.0 bits (94), Expect = 3e-12 Identities = 209/312 (67%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 31599 AGACCGAGCTCGAATCCGACGCCGGCGATCGCATCACCTTCGACCTCTCCGTGCACCTGC 31658 ||||||| || ||| || |||||||| ||||| || ||||| || || || ||| Sbjct 996 AGACCGACCTGGAACAGGAAGCCGGCGACACCATCAGCTATGACCTGTCGGTCCAGCTGG 937 Query 31659 GCGGCAAGCCGACCTACGGCGATGCCCGCGTGGAAGGTAAGGAAGAAAGCCTTCGCTTCT 31718 ||||| ||| || | | ||||| ||| | ||||| |||| || | || ||||| Sbjct 936 GCGGCGAGCTGATCGAGGGCGACGCCAAGGCCGAAGGCAAGGGCGAGAAGCTGGACTTCT 877 Query 31719 ACCAGGACGAAGTGCGCATCGACCAAGTGCGTCACTCGGTTTCGGC--CGGCGGTCGCAT 31776 | |||| | || ||||||||| | ||| | | || | || ||| || ||||| Sbjct 876 TCACGGACAAGGTCTTCATCGACCAGGCCCGTAAGCCCGT--CAGCTGCGGTGGCCGCAT 819 Query 31777 GTCGCGCAAGCGCACGGTCCACAACATCCGCCGCATCGCGCGCGATCGTCTCGGTGACTA 31836 ||| ||||||||||| || ||| || | ||| ||| ||| | || || || || Sbjct 818 GTCCCGCAAGCGCACCGTGCACGACCTGCGCAAGGTCGGCCGCAACCGCCTGACGGAATA 759 Query 31837 CT-TCTACAAGTTCACCGACGAGCTGCTGTTCATCTACCTGTCGGGTGCACGCGGCATCA 31895 || | || | ||||||| || | ||||| ||| | || || || ||||||| Sbjct 758 CTGGGCGCGCGTGTA-CGACGAGTTGTTCTTCATGTACGCCGCCGGCGCGCGTGGCATCA 700 Query 31896 ACCTCGACTTCA 31907 ||| ||||||| Sbjct 699 ACCCGGACTTCA 688 >seq23830 Length=533 Score = 132 bits (146), Expect = 2e-26 Identities = 230/333 (69%), Gaps = 1/333 (0%) Strand=Plus/Plus Query 10140 ATGGCAAGCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGTCCGT 10199 |||||| ||| ||||| || || | || || ||| | ||| ||| || || | || Sbjct 182 ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAGATGCGC 241 Query 10200 TACCTGCCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGATCGATACAAG 10259 | | || ||||||||| ||| || ||| || |||| || ||||| || | Sbjct 242 ACCTTCCCCAGCGGCGACCAGGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGC 301 Query 10260 GACAAGGCGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCTTCGGT 10319 |||||| | |||||| | |||||| || || || ||||||||| || |||| ||| Sbjct 302 GACAAGAACACCGGCGAGAACAAGGAAGCCACCGAGTGGCACCGCATCGTGTTCAACGGC 361 Query 10320 CGGCTGGCTGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCGAGGGG 10379 || ||||| |||||||| | | || |||||||||||||| | ||||| | || || Sbjct 362 CGTCTGGCCGAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATGTGGAAGGC 421 Query 10380 CGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTACACGACCGAGATC 10439 || | || || |||||| || || ||||||||||| | ||| || || ||| Sbjct 422 AGCCTGCGCACCCGCAAGTGGACCGACCAGTCCGGCCAGGAAAAATTCACCACGGAAATC 481 Query 10440 GTCGCTGACCGCATGCAGATGCTCGGCAAGCCG 10472 ||| ||| |||||||||||| ||| ||||| Sbjct 482 CGCGCCGACACCATGCAGATGCTGGGC-AGCCG 513 >seq1840 Length=6135 Score = 132 bits (146), Expect = 2e-26 Identities = 260/380 (68%), Gaps = 11/380 (3%) Strand=Plus/Plus Query 62921 CGAGGATGGCACGCCCGTGAAGATGGGCGACACCATCAC-CCGCCA-GCGCGCCGACGAG 62978 ||||||||||||||| |||| | |||||||| || ||| ||| || |||||| | Sbjct 417 CGAGGATGGCACGCCGGTGAGGCTGGGCGACCGCACCACGCCGGCACGCGCGCTGCA--- 473 Query 62979 CTGGCGCGCAATCTCAT--GGCAAAGGACGAGCGCGATTTGCGCGCGTCGCTTCCGGCCG 63036 || || ||| ||||| ||| | ||| || | || || ||||||||||| || | | Sbjct 474 -TGCCGTGCAGGCTCATCTGGCCAGGGAGGAAGGGGAGTTCCGCGCGTCGCTGCCCGGTG 532 Query 63037 ACACGCGGCTCTATCAGGCCGAATACGACGTGTACCTGGATTTTGTCGGCCAGTACGGCA 63096 ||| || |||| ||| |||||||| || | ||||| || ||||||||||| Sbjct 533 TGGCGC---TCAGCCAGGGCGAGTACGACGTCTATGTCGATTTCCTCTACCAGTACGGCA 589 Query 63097 TCGGCAACTGGCGCAAGTCCAGCATGCGCCGGCACGTCATCGCGGGCGAGTATGCGGCGG 63156 |||||||||||||| ||| ||||||||||| | | ||| |||||| || Sbjct 590 TCGGCAACTGGCGCGCGTCGTCGATGCGCCGGCATCTGCTGCAGGGTGAGTATCACCAGG 649 Query 63157 CGTGCAAGGCGCTGCTGAACTACCGTTTCGCCGCCGGCTACGATTGCAGCACCCTCGTCA 63216 | ||| | || ||||| | | || | |||||||| || |||| | || Sbjct 650 CCTGCGATGCCTTGCTGCTGTGGAGGCGGGCAGGGGGCTACGACTGTTCAACCCGCATCG 709 Query 63217 ACGGCAAACCGAACAAGCGCTGCTGGGGCGTGTGGGTGCGCCAGAAGCAGCGCTATGACA 63276 ||||| || |||| |||||||| ||||||| ||||||| |||||||| ||| Sbjct 710 ACGGCCGCCCCAACACCGTGTGCTGGGGAGTGTGGGAGCGCCAGCAGCAGCGCCATGCGC 769 Query 63277 CCTGCATGGGGGCGCAATGA 63296 ||| ||| || ||| ||| Sbjct 770 GTTGCCTGGCGGAGCAGTGA 789 >seq17070 Length=816 Score = 116 bits (128), Expect = 2e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 29135 CGAGAACGACATCACGCGCACGAAGGCCGACTTCATCATCGACGAGGCCGAGTGGCGCGC 29194 ||| ||||||||||| |||| ||||||| |||||| | ||| || || | |||| Sbjct 590 CGAAAACGACATCACCCGCAACCAGGCCGATTTCATCGTGGACCAGCAGGATTTCCGCGA 531 Query 29195 GACCATGCGTCAGGCGGCCGTCGCCGAGCTGATGGAGGTCATCGGCAAGATGCCGCCGGA 29254 | ||||||| |||||||||| | || | | ||| | | |||||| | |||||||| Sbjct 530 GTCCATGCGCCAGGCGGCCGCGGAGCAGTTCTTCGAGATGCTGGGCAAGCTCCCGCCGGA 471 Query 29255 GATCGCGCTGACGATGCTCGACCTGCTCGTCGAGAACATGGACATCCCGAACCGCGACGA 29314 |||||||||| |||| |||||| | |||| | | ||||| |||| | || || Sbjct 470 TATCGCGCTGAACCTGCTGGACCTGGCCATCGACATGACCGACATGCCGATCAAGGAAGA 411 Query 29315 GCTCGTGAAGCGCATCCGCGCCGTGAACGGCCAGAAAGACCCGGATCAGGACGA 29368 | |||| ||||||||| | |||||||||| ||| | | |||||| || Sbjct 410 GGTCGTCGCACGCATCCGCAAGCTCAACGGCCAGACCGACACCGGTCAGGAAGA 357 >seq14555 Length=974 Score = 114 bits (126), Expect = 5e-21 Identities = 261/384 (68%), Gaps = 19/384 (5%) Strand=Plus/Plus Query 62921 CGAGGATGGCACGCCCGTGAAGATGGGCGACACCATCAC-CCGCCA-GCGCGCCGACGAG 62978 ||||||||||||||| ||||||||||||||| || ||| ||| | |||||| | Sbjct 216 CGAGGATGGCACGCCGGTGAAGATGGGCGACCGCACCACGCCGGTACGCGCGCTGCA--- 272 Query 62979 CTGGCGCGCAATCTCAT--GGCAAAGGACGAGCGCGATTTGCGCGCGTCGCTTCCGGCCG 63036 || || || | ||| ||| | ||| || | | || ||||||||||| || | || Sbjct 273 -TGTCGTACAGGCCCATCTGGCCAGGGAAGAAGGACAGTTTCGCGCGTCGCTGCCCGGCG 331 Query 63037 ACACGCGGCTCTATCAGGCCGAATACGACGTGTACCTGGATTTTGTCGGCCAGTACGGCA 63096 ||| || |||| ||| |||||||| || | ||||| || ||||||||||| Sbjct 332 TGGCGC---TCAGCCAGGGCGAGTACGACGTCTATGTCGATTTCCTCTACCAGTACGGCA 388 Query 63097 TCGGCAACTGGCGCAAGTCCAGCATGCGCCGGCACGTCATCGCGGGCGAGTATGCGGC-G 63155 |||||||||||||| ||| ||||||||||| | | ||| || || || | | Sbjct 389 TCGGCAACTGGCGCGCGTCATCGATGCGCCGGCATCTGCTGCAGGGTGAATA-CCGCCAG 447 Query 63156 GCGTGCAAGGC---GCTGCTGAACTACCGTTTCGCCGCCGGCTACGATTGCAGCACCCTC 63212 || || | || ||||||| | || || | |||||||| || |||| Sbjct 448 GCCTGTGATGCCTTGCTGCTGTGGAAGCG---GGCAGGGGGCTACGACTGTTCGACCCGT 504 Query 63213 GTCAACGGCAAACCGAACAAGCGCTGCTGGGGCGTGTGGGTGCGCCAGAAGCAGCGCTAT 63272 ||| | ||| || |||| |||||||||||||||| ||||||| | |||||| || Sbjct 505 GTCGATGGCCGCCCCAACACCGTGTGCTGGGGCGTGTGGGAGCGCCAGCAACAGCGCCAT 564 Query 63273 GACACCTGCATGGGGGCGCAATGA 63296 | ||| ||| || ||| ||| Sbjct 565 GCGCGTTGCCTGGCGGAGCAGTGA 588 >seq1293 Length=7953 Score = 95.1 bits (104), Expect = 5e-15 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 62919 TACGAGGATGGCACGCCCGTGAAGATGGGCGAC--ACC-ATCACCCGCCAGCGCGCCGAC 62975 |||||||| |||||||||||| || || ||| ||| ||||||||| ||||||| Sbjct 110 TACGAGGACGGCACGCCCGTGCAGCTGTCGGACCCACCGATCACCCGCGAGCGCGCGCTG 169 Query 62976 GAGCTGGCGCGCAATCTCATGGCAAAGGACGAGCGCGAT-TTGCGCGCGTCGCTTCCGGC 63034 |||||| ||||| | || | ||||||||| || || || || || || |||| Sbjct 170 CAGCTGGTGCGCAGCCACACCTCCAAGGACGAG-GCCATGTTCCGAGCCAGCCTGCCGGG 228 Query 63035 CGACACGCGGCTCTATCAGGCCGAATACGACGTGTACCTGGATTTTGTCGGCCAGTACGG 63094 || | | | || ||||| ||||||||| | |||||||| || | ||||||||| Sbjct 229 CGTGGCCCTG---TACCAGGCGGAATACGACCTCTACCTGGACTTCACCTACCAGTACGG 285 Query 63095 CATCGGCAACTGGCGC 63110 ||||||| ||||||| Sbjct 286 CATCGGCGCCTGGCGC 301 >seq956 Length=9855 Score = 86.0 bits (94), Expect = 3e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 14053 CCTGGACGCCCAATATTTCGGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAG 14112 ||| ||||| |||| ||||||||||| || || |||||||| ||||||| |||| Sbjct 2328 CCTTGACGCGCAATGGTTCGGAGTGGCGCAGCGGCGCCGCCGCGTGTTCGCTGTCCTCGA 2269 Query 14113 TGGTCGAGACTGGTTCGATCCCACACCGGTACTTTTTGAGTGGGATGGCGTGCGCCGGGA 14172 | | || |||||| |||| ||||||||| ||||| | || || ||||| |||| Sbjct 2268 TTCTGGAAACTGGTCAGATCGAGGCCCGGTACTTCTTGAGCGCGACAGCATGCGCGGGGA 2209 Query 14173 TTGTCCGCCGCGCCG 14187 || | ||||| |||| Sbjct 2208 TTCTGCGCCGAGCCG 2194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204209112261297