Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq8212 136 1e-27 seq1150 116 1e-21 seq12243 114 5e-21 >seq8212 Length=1751 Score = 136 bits (150), Expect = 1e-27 Identities = 292/424 (69%), Gaps = 22/424 (5%) Strand=Plus/Minus Query 17227 TGGGACGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTA 17286 ||||||||||| |||||| | ||||| ||||||||||| ||||| | || || | | Sbjct 1634 TGGGACGGTACCTTCAAGAGTGGCTGGACCAACAATCCGGCCTGGGTGTTCTTCGACATC 1575 Query 17287 CTTCTCGACAAGCTCAACGGATTGGGTGACCGTGT--CGATGCTTCGATGGTCGATAAGT 17344 | | || | | | ||| |||| | ||||| || || | ||| || |||| Sbjct 1574 GTCACCAACGATCGCTTCGGCCTGGGCCATCGTGTTCCGCTGGACTG--GGTGGACAAGT 1517 Query 17345 GGGCGCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCA 17404 || ||||||| |||||||| |||||||| ||||| || ||| || ||||||||| Sbjct 1516 GGCGGCTGTACCAGATCGCGCGCTACTGCGATGAACTGGTCAGCGATGGCCAGGGCGGCA 1457 Query 17405 AGGAGCCGTGCTTCACCTGCA-ACTGCGTGCTTCAGACGCGCGCGGACGCATTCAAGGTG 17463 |||||||| |||||||||||| ||| | || ||||| ||||| || || | ||| Sbjct 1456 AGGAGCCGCGCTTCACCTGCAGCCTGTAT-CTGCAGACCCGCGCCGAGGCCTATCGCGTG 1398 Query 17464 GTACAGGATCTCGCGAGCGTCTTTCGCGGCAT----TTCGTACTGGGGCGCCGGGTCGGT 17519 | ||||| |||| | | | || |||||||| ||| || || |||| ||| ||| Sbjct 1397 TTGCAGGACATCGCCACCATGTTCCGCGGCATCAGCTTC-TA-TGCGGCG--GGGCAGGT 1342 Query 17520 GGTCGCGTCGGCCGATATGCCGTCCGATCCGGT-CT-ACCTGTACACGGCC--GCGAATG 17575 | | || |||||||| ||||| || ||||| || |||| || ||| || || | Sbjct 1341 GATGGCCTCGGCCGACATGCCCAAGGACCCGGTGCTGACCT----ACAGCCAGGCCAACG 1286 Query 17576 TCGTCGGTGGTTCATTCAAGTACGTCGGCAGCGAACGCAAGACGCGTTACACGGTCGCGC 17635 || ||| || ||| | || | |||||| |||| | |||| ||||||| || | Sbjct 1285 TCATCGAAGGGCGTTTCCACTATGCTGGCAGCAGCCGCACGGCGCGGCACACGGTGGCCC 1226 Query 17636 TCGT 17639 | || Sbjct 1225 TGGT 1222 Score = 102 bits (112), Expect = 3e-17 Identities = 273/402 (68%), Gaps = 29/402 (7%) Strand=Plus/Minus Query 18019 GCGCGCGCAGTCAAGTCGGTCGACGGCGACACGGTCACGCTCGCCGAGCGCTTCGACGCC 18078 || ||| | || ||||||| |||||||| ||||| || || || || || | || | Sbjct 839 GCACGCACGGTGCAGTCGGTGGACGGCGAGACGGTGACCGTCAGCGCGCCCTG-GTCGGC 781 Query 18079 GAT-CCGGTGGCG--GGCGCTGTGTGGATGATCGAAA-GCCGCGAGCTCGCGGCGCAGCA 18134 | | ||||||||| | || | || | || | ||| |||| ||||| || |||||| Sbjct 780 GGTGCCGGTGGCGCAGTCGGTCTGGGCAT--TGGAATCGCCG-GAGCTGGCCCTGCAGCA 724 Query 18135 GTATCGCGTTGTGAGCGTGCAGGAAAGCGACGACGACGGCCAGATCGTCTACACGATCAA 18194 |||||||| || || ||| ||| | ||| | || || | || ||||| Sbjct 723 CTATCGCGTGCTGT-CGATCAG-----CGAAGGCGAGGACCTGACC---TATCAGATCAC 673 Query 18195 CGCGACGCAGTACGAGCCGGGGAAGTACGCGGCGATCGACGACGGCGCACAGATTCAGCA 18254 |||| || ||| |||||| |||||||| || |||||||||||| | | | |||| Sbjct 672 CGCGCTCAAGCACGTGCCGGGCAAGTACGCCGCCATCGACGACGGCACGCGCCTGGAGCA 613 Query 18255 ACGGCCGATCACGATCGTTCCGCCATCGGTGCAGCCGCCGCCGTCGAACGTCCGCCT--- 18311 | |||||||| ||| | ||||| ||||||||| | ||| | ||||| || | Sbjct 612 GCCGCCGATCAGCATCATCCCGCCCAGCGTGCAGCCGGCACCGGCCAACGTGCGGATGGC 553 Query 18312 CTCGACATACTCGGTGGTCGATCAGGGTATTTCGAAAACAACGATGGT---GATCGCGTG 18368 |||| ||| ||||||||| ||||| | ||| | | || || | ||||| ||| Sbjct 552 CTCG-CAT--GTGGTGGTCGACCAGGGCA--TCGCTACCTCCG-TGCTCACGATCGAGTG 499 Query 18369 GGATGCAGCGAACCACGCGACAAGCTACGTCGTCGAATGGCG 18410 |||||| ||| || | |||| | || | ||| |||||||| Sbjct 498 GGATGCTGCGGACAAGGCGATCGGTTATGACGTGGAATGGCG 457 >seq1150 Length=8598 Score = 116 bits (128), Expect = 1e-21 Identities = 270/401 (67%), Gaps = 7/401 (2%) Strand=Plus/Minus Query 3063 GATGTCCAGTTGCTGGAGACGCGGGCATTCAACATCGAGGAAATCTGCCGCTGGTATCGC 3122 || || ||| |||||||| | | | | | | |||| || |||||||| |||| ||| Sbjct 3138 GACGTGCAGCTGCTGGAGTCCAGATCGTGGAGCGTCGAAGAGATCTGCCGATGGTTCCGC 3079 Query 3123 GTTCCGCCGTTTATGGTCGGCCACAGCG---AGAAATCGACAAGCTGGGGAACTGGGATC 3179 || ||||| | |||||||||||| || || | || | ||||| | ||||| Sbjct 3078 GTGCCGCCCTGGATGGTCGGCCACTCCGCCCAGGGCGCCACGAAGTGGGGCAGCGGGATG 3019 Query 3180 GAACAACAGACGCTCGGCTTTTTGACATTCACCCTGCGGCCTTGGTTGACGCGGATTGAA 3239 || || | | | ||||||| |||| ||||| ||| | | ||| | | ||| ||||| Sbjct 3018 GAGCAGGAAATGATCGGCTTCCTGACCTTCACGCTGAGCACCTGGCTCAAGCGCATTGAG 2959 Query 3240 CAGGC-AGCGCGACGGTCCCTGCTGAGGCCGGGAGAGCGCGATCAGTTT-TATGCGGAGT 3297 ||||| | | | || | |||| | ||||| || ||| | ||| | || || | | Sbjct 2958 CAGGCCATCAACAAGGATC-TGCTCACGCCGGCCGACCGC-ACCAGGTACTACGCCAAAT 2901 Query 3298 TCTCCGTCGAAGGGCTGTTGCGAGCCGATAGTGCAGGCCGAGCGGCGTTCTATTCAACGA 3357 || ||| ||||| ||| |||| | || || | | ||| || |||||||| | || Sbjct 2900 TCAGCGTGGAAGGCCTGCTGCGCTCTGACAGCACGGCCCGGGCCGCGTTCTACGGAGCGC 2841 Query 3358 TGACCCAAAACGGCCTGATGACGCGTGACGAATGTCGGGCGAAGGAAAACCTGCCGCCGA 3417 || | ||| | ||||| || |||||| || | | |||| |||| ||||||| Sbjct 2840 TGGTGGACCGCGGGATCATGACCCGCGACGAAGTGCGCGAGCTGGAAGACCTCCCGCCGA 2781 Query 3418 TGGGTGGCAATGCAGCGGTGTTGACGGTTCAGTCGGCATTG 3458 |||| ||||| || ||| | |||| || ||||||||| || Sbjct 2780 TGGGCGGCAACGCCGCGCAGCTGACCGTCCAGTCGGCAATG 2740 >seq12243 Length=1175 Score = 114 bits (126), Expect = 5e-21 Identities = 526/812 (65%), Gaps = 58/812 (7%) Strand=Plus/Plus Query 15091 AGGCGATTGAGGCGCACGCGCTCGCAGAGTATCCGCGCGAGTGCTGCGGGCTCGTCGTGA 15150 |||| || |||||||||| | || ||||| |||||||| ||||||||||| ||||| Sbjct 365 AGGCCATCCAGGCGCACGCCGTGGCCGAGTACCCGCGCGAATGCTGCGGGCTGATCGTGG 424 Query 15151 AGACCGAGAGCGGCGAGATATACGTGCGCTGCCGCAACCTTGCGGCCGTGCCGACCGACC 15210 | || || ||| || | | |||||||||| | || ||| ||| | ||| | Sbjct 425 CCATTGAAGGCCACGAACGCTATCTTCCCTGCCGCAACGTGGCCGCCACGCCCAGCGAGC 484 Query 15211 AGTTCGCGCTCGCGTCGGAGGACTACGCAGCGGCCGAAGACATGGGCGAGATTGTCGCTC 15270 | ||| || || | || ||||| || | ||||| |||| ||||||| | | || | Sbjct 485 ATTTCCGTCTGCCGGCTGAAGACTATGCCGTTGCCGAGGACAAGGGCGAGGTGCTGGCCC 544 Query 15271 TCGTTCATTCGCATCCCGGCGCATCGGCACAGCCGACCGACGAGGACCGCACGATGTGCG 15330 | || || ||||||| ||| | ||| ||| |||||| ||||| ||||||| Sbjct 545 TGGTGCACAGCCATCCCGACGCCGCCGCAACGCCATCCGACGCAGACCGGGTCATGTGCG 604 Query 15331 GGCGCAGCGGCATCGCGAAATGGGTGATCGTGTCGCTCGGCGTGCAGGCCGATGGCTCGA 15390 ||||||||| | || ||| ||||| ||||| |||| || ||| Sbjct 605 AGCGCAGCGGGCT---GACCTGGCACATCGTCAGCGTCGGC---CAGGTAACAGG--CGA 656 Query 15391 TCGGCATCGACGACTGGTGCGAATTCGAGCCGGGA-------GGCTACGTCGCGCGACTA 15443 |||| || | |||| || || | | |||||| | || | | Sbjct 657 --GGCACCGCTGTGCGGTGATCTGCAGACCCTGCATCCCACGGGCTACATGGCACCGTTG 714 Query 15444 GTCGGCCGCCAGTTCGTCCATGGCGTGCACGACTGCTACGCGATCGTGCGCGACTGGTA- 15502 ||||| |||||||||| ||| || |||| ||||||||| | || ||||| | | Sbjct 715 GTCGGTCGCCAGTTCGCCCACGGTGTGCTGGACTGCTACAGCCTGGTCCGCGATTTCCAC 774 Query 15503 TCTCGCCGAGCGCGGCGTCGCGTTACCCGACTTCGAGCGCGAGGACGAGTGGTGGAACGA 15562 | || ||| | ||| || || | |||| | ||| ||| ||||||| ||||||| | | Sbjct 775 GCACG-CGAACTGGGCATCCCGCTGTCCGAGTACGAACGCCAGGACGACTGGTGGAGCCA 833 Query 15563 TGGCCGATCGAATCTCTA----CCTCAACCACTATCAGGACGCTGGCTTTCTCGACGTCG 15618 |||| | | || || | | ||| || || | || |||| ||||| | | Sbjct 834 CGGCC---AGGACCTGTACAGCCTTGAACGGCT-GCACGCCGAGGGCT---TCGACCT-G 885 Query 15619 GCCGCGACGTGACGTTGCAGGTCGGCGACGTGCTGCTGATGCAGATCCGC-AGCAAGAAC 15677 || | | || | |||| |||||| || | ||||||||||||||| || | Sbjct 886 ATCGAG-GGCGA-GCCGCAGCGGGGCGACATGATCCTGATGCAGATCCGCTCGC-----C 938 Query 15678 GGCGTGCCGAATCACGCGGGCGTGTATCTCGGTGACGGGCAATTCCTGCACCACATGCAC 15737 | || | || ||||||||| | || ||||| |||||||| | ||||| ||| |||| Sbjct 939 G--GTCACCAACCACGCGGGCATCTACCTCGGCGACGGGCAGATGCTGCATCACCTGCAT 996 Query 15738 GGGCGTCTGTCGACGCGCGCGGTGTGGGGCGGAATGTGGGCCGACAGCTGCACGACGGTG 15797 || || ||||| | || || ||||| |||||||||| ||| |||| || || Sbjct 997 GGCCGCCTGTCCGAGACCGTACCGTACGGCGGCATGTGGGCCG--AGC-GCAC-CCGTTG 1052 Query 15798 C----TGCGCTA---CGTGG-GAGACAGGAAGTGAGCGAGACGCTTCGCATGATAAGGCT 15849 | | ||| | || || | | || | | ||| || ||||| | ||| | || Sbjct 1053 CATCGTCCGCCATCGCGAGGTGCGCCATG-ACTGACCG----TCTTCGTACGATCCGCCT 1107 Query 15850 GTACGGCACGCTCGGCGTGCGTTTCGGACGCA 15881 |||||||| ||| |||| ||| || ||||||| Sbjct 1108 GTACGGCAAGCTGGGCGCGCGCTTTGGACGCA 1139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175372357123386