Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14623 170 4e-37 seq32362 159 8e-34 seq25614 149 1e-30 seq20474 134 3e-26 seq28136 125 2e-23 seq27836 98.7 2e-15 >seq14623 Length=969 Score = 170 bits (188), Expect = 4e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| || |||||||||||||||||||| |||||| Sbjct 947 ATGCCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCA 888 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || |||| || ||||| || |||||||||||||| || || | ||| || ||||| Sbjct 887 GCAAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGG 828 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| ||||| || || ||||| || | ||| || | || | || Sbjct 827 GGGATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTC-CGAGCTCTC 769 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 768 CACTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Score = 147 bits (162), Expect = 5e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || ||||| || |||||||| ||||| | || |||| |||||| Sbjct 473 AGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCT 414 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| ||||| || || | || || ||||| || |||||||| || ||| Sbjct 413 TCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCC 354 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 || ||||| ||||||||||| || | |||||| | || | || || || | || || || Sbjct 353 TGGATCTTGGCTTTTACATTGTCAATGGTATC-CGAGCTCTCAACTTCCAACGTTATCGT 295 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||||| || ||||| || || |||||||| Sbjct 294 CTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 Score = 131 bits (144), Expect = 4e-25 Identities = 171/234 (73%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||| ||||| ||||| || || Sbjct 263 ATGCCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCG 204 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || |||| || ||||| || || ||||||||||| || || | |||||| || || Sbjct 203 GCAAGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGG 144 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| |||||||| || ||||| |||||||| || | ||| || || | || Sbjct 143 GGAATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTC-AGAGCTCTC 85 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| || ||||| ||||| || || || ||||| || Sbjct 84 GACTTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTT 31 Score = 131 bits (144), Expect = 4e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || || || ||||||||||| || || || || Sbjct 719 ATGCCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCG 660 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || |||||||| || || || || ||||| ||||| |||| | ||| || ||||| Sbjct 659 GCAAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGG 600 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || ||||| ||||| ||||| || || ||||| || | ||||| | || | || Sbjct 599 GGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATC-CGAGCTCTC 541 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 540 AACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 >seq32362 Length=298 Score = 159 bits (176), Expect = 8e-34 Identities = 163/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || || || | ||||||||| ||||| || ||||| || | ||||||| || || || Sbjct 214 ACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCCATCCTCC 155 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || ||||| |||||||| || |||||||| |||||||| || || ||||| || |||||| Sbjct 154 AGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGA 95 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTT 104529 || || |||||||| || || | |||||| || | || ||||| ||||| |||||||| Sbjct 94 ATTTTCGCTTTTACGTTATCAATCGTATCGG-AGCTCTCAACCTCCAGTGTGATAGTCTT 36 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || |||||||||||||| Sbjct 35 GCCTGTCAACGTCTTCACAAATATCTGCAT 6 >seq25614 Length=477 Score = 149 bits (164), Expect = 1e-30 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| | ||| || | ||| | || ||||| || |||||||| || ||| Sbjct 41 ATGCCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCA 100 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || || || || || || || || ||||| || || |||||||| || ||||| Sbjct 101 GCCAAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGG 160 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || |||||||| || ||||| ||||| || || || || || | ||| || | || | || Sbjct 161 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTC-CGAGCTCTC 219 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | |||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 220 AACTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 Score = 96.9 bits (106), Expect = 8e-15 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || || || | || |||| ||||| || || || ||||| Sbjct 302 GTAGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCT 361 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || ||||| || ||||| ||||| ||||| Sbjct 362 GCGAAGATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGATCTTAGCTTTA 421 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||||| || | ||| || || | || || || || || || |||||||| || || Sbjct 422 ACATTGTCAATGGTGTC-AGAGCTCTCGACTTCGAGAGTGATGGTCTTACCGGTGAG 477 >seq20474 Length=655 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | || || || |||||||| |||||||| Sbjct 95 ATGCCTCCCCTCAGACGAAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCG 154 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || ||||| || || || |||||||| || |||||||| || || || Sbjct 155 GCCAAGGTGCGGCCATCTTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGT 214 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || ||||| || || || || ||||| || || ||||| || | |||||| || | || Sbjct 215 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCAATTGTATCGG-AGCTCTC 273 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || || ||||||||||| || || || ||||| |||||||| Sbjct 274 TACCTCGAGAGTGATTGTCTTACCAGTGAGGGTCTTCACAAAAATCTGCAT 324 >seq28136 Length=407 Score = 125 bits (138), Expect = 2e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || ||||| | ||||| || || || || || || || ||||||||||| || || || Sbjct 241 ATACCCCCACGAAGCCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCC 182 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | || ||||| | || || || ||||| || || | || || || || Sbjct 181 GCCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGC 122 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| || || || || ||||| || | |||||||| ||| Sbjct 121 GGGATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCA 62 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| || || ||||| || || || || ||||| || |||||||| ||| Sbjct 61 ACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTTG 8 >seq27836 Length=415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||||||||| || || | ||||| | ||| ||||| || || || || Sbjct 154 GTCGATTCCTTCTGAATATTGTAATCGGCCAGAGTACGACCATCTTCCAGCTGCTTACCG 95 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || ||||| || ||||| || || ||||| ||||| || || Sbjct 94 GCAAAGATCAACCTCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTC 35 Query 104483 ACATTTTCTACGGTATC 104499 ||||| || | ||| || Sbjct 34 ACATTGTCAATGGTGTC 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150874118294612