Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq1131 288 2e-73 seq8149 201 2e-47 seq24300 158 2e-34 seq8333 114 3e-21 >seq1131 Length=8710 Score = 288 bits (318), Expect = 2e-73 Identities = 803/1211 (66%), Gaps = 31/1211 (3%) Strand=Plus/Plus Query 2311 GTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGCCTTCTGCCTG 2370 ||| ||||||||||| |||||| | |||| |||| | ||||||| | |||||||| Sbjct 4176 GTCGATGCCGATGTAGGTCACGTTGAACTTCTGCGTGATCGCGCGGATGGCCTCTGCCTG 4235 Query 2371 CGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGA 2430 | | |||||| || || |||| || || | ||||| || |||||||| |||| Sbjct 4236 CTGCTCGAAGTCCGCCCCCTTGAACTGCTGCCGGTGCAGCAGCCGGAACTTGCCGCCCGG 4295 Query 2431 AACCACCGGCGGCGCGAGTACGACACATC-CGGCACTGTCGCCGGTGTGGGACGGGTCGT 2489 || |||||| || | || || || | | ||| ||||||||||| || ||||||| Sbjct 4296 CGCCCGCGGCGGTGCAATCACCAC-CAGCGCCGCAGCATCGCCGGTGTGCGATGGGTCGT 4354 Query 2490 AGCCAATCCAGACCGG-GCGTGAGCCGAATGGATGGTCGGCGAACGGGGCGAAGTCCTCC 2548 | || | ||| ||||| ||| | || | || | ||| ||||| | | ||| || Sbjct 4355 ACCCCACCCACACCGGAAAGTGCG-CGTACGGCCGCGTGGCAAACGGCTTGCAATCCGCC 4413 Query 2549 CATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACAGATGCC 2608 || | ||| ||| |||||||||| ||||| |||| || || ||| | || Sbjct 4414 CACGCCTCCCAGCTGTCCACCATGCAGCCCTGCATTTCCTTGAGCGTGAACAGGCTAGCG 4473 Query 2609 TTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACTGTTTTCGCGT 2668 | ||||||| ||||||||||| ||||||| || || || ||| |||| Sbjct 4474 CTGTCGTCGATGAACTCGCACATGTACAGGTTGGCGAACTCTTCCGGGCTGCTTTCTTCC 4533 Query 2669 CTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAG-GGCGTCCTCAATAGTGAC 2727 | |||| ||||| |||||||||| ||||||| | ||| | |||||||| || || || Sbjct 4534 CGCAGCTCGTCGATGTCGAACAGGTTGCAGCC-CAGGCGTGCCGCGTCCTCGATCGTCAC 4592 Query 2728 AATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTGAT 2787 | | ||||||| | || || | | | || ||| ||||| ||| || | Sbjct 4593 CACGTCGCGCCACTTGCGATCGGCCCCGCGGATGCCGCCGCGCAGCGCTGCGTGGCTCAC 4652 Query 2788 GTCGATTTCGATGCGGTCAGCAGCACTGGC-GCGCCCCTTGTTGAACAGCTCGCCAGACC 2846 |||||| |||| || || || || ||| || |||||| | | ||| || Sbjct 4653 GTCGATGGTGATGGCCTC----GCCCTTGCTGCGGCCTTTGTTGCGCTCCGTGCCGTTCC 4708 Query 2847 AGAAGGGATAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAGAT 2906 |||| ||||| || | |||| || | || || || || ||||| || |||| || Sbjct 4709 AGAACGGATACGCCTCATGCGACATGGCCGACGGGGTGGAGAAGTACGTCTTGCGCCAAT 4768 Query 2907 GCTTTTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCAGA 2966 |||| |||| |||||| ||| ||| || ||| |||| |||| || | ||| | Sbjct 4769 GCTTGTGCGTCGCCATGGCCGCGGCCACCTTGTTGAGCTGGCGAAAGCCCGACACCCAAA 4828 Query 2967 ATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAATTGGTGCCGA 3026 | | ||||||| || | ||||||| | | | |||||| || || | ||||||||| | Sbjct 4829 AGAACTCATCGAAGTAGAAGTCGCCGCTGCGCCCCTGCGCCGTCTTCGCATTGGTGCCCA 4888 Query 3027 GAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCAGTCAGGTCGACGT 3086 ||| ||||| || |||| | | | | || || |||||||| |||| || ||| Sbjct 4889 AAAAGTGCAGCTCCGCACCGT--TCGAC-AGCACGATAGGGTCGCCGCTCAGCTCCACGC 4945 Query 3087 CAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTACTGG 3146 | ||||| | ||||| | ||||| | |||| || ||||||| || | Sbjct 4946 CCACCAGCCCGGCAAAGGCCAGCATGTACGTCTTGAACTGGTGCGCCTGCGCCTTTGATG 5005 Query 3147 CCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGAAA 3206 | || || |||||||| || | || | ||| ||||| | ||| |||||||||| || Sbjct 5006 CAGAAAGGAAAATCTGATTGCGCCCCTCCGTGATGGCGCGTATCAGCGCCTCGCGGGCAA 5065 Query 3207 AGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGGTGCGCCAGTC 3266 |||| | || || || ||||| || || || || | || | || | || | | Sbjct 5066 AGTACCAAGTGGCCCCGATCTGCCGCGACTTCAGCAGCAGCCGCGTGCGCTCCGTCTGCG 5125 Query 3267 CTGCCCGGTACCACTGCAACTGGTAT-TCGAAAG-ACTGGTCGAAGAAAATTTCTTCCAG 3324 | ||| |||||| | || || | |||| ||| ||| ||| || || ||| Sbjct 5126 CCTCCC---ACCACTTC--GCGGCATACCCAAAGTTCTGCTCGTGGAAGATCTCCAGCAG 5180 Query 3325 CTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGC---CTCTTACGCTCCCCCTT 3381 ||| ||| ||| ||| |||| ||| |||||| | ||| || || | Sbjct 5181 CTTCTCGATCTGCTCTTCGGTGAAGTGGTTGCGCTTCGGCGTGCGCTTGGGCGCCGC--- 5237 Query 3382 GTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGT-CTGGCT-GTAGCGG 3439 ||| || ||||| ||||||||| | |||| | || ||||| || || || |||||| Sbjct 5238 GTTGCGCGCGGCAATGTTGGGGTTCAAGTCGCCTTCCTTGCCCGTGCT--CTGGTAGCGC 5295 Query 3440 TTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGCCG 3499 | ||||||||| ||||| | |||||| || |||||||| ||||| |||||||||||| Sbjct 5296 TCCACGCGCGCCGTGCGCTCCAGCTGCCGGCCCAGCAGGTCGATCTCCTTGAAGTCGCCG 5355 Query 3500 CCTGACTTTTG 3510 || | ||| || Sbjct 5356 CCCGTCTTCTG 5366 Score = 134 bits (148), Expect = 3e-27 Identities = 239/346 (69%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 378 CGGCACGCGGTGAGCGTCCATCAGGTCGGCGGCACTGGCTTTCTTGATATTGAAAAAGTC 437 |||||||||||| ||| ||| || |||||| |||| |||||||| | ||||| Sbjct 2965 CGGCACGCGGTGGGCGGCCAGCACGTCGGCCATGCTGGTGTTCTTGATGGCGGCGAAGTC 3024 Query 438 ATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGTCCGGTTTCCCGTTCGG 497 || || | ||||| |||||| | || | | || | |||||||| || ||| || Sbjct 3025 GTCTTTGGCGGCGATCTCGCTGATGGGGATCAGCTTCAAGCCGTCCGCCTTGCCGCCAGG 3084 Query 498 TGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAATTACGCA-TTGCATCGC 556 | || | |||||||| |||||||| |||| || || || |||| ||| |||| Sbjct 3085 CGCGTGCAGGAACAGGTTGCGGAAGTTGCCCGGCCCCTTGGACTTGCGCAGCTGC-TCGC 3143 Query 557 GCAGCGATTCGACGTCAGTCGCGCTTTGCGCCGGGTCAGTCACATACATGATGTAACCTG 616 |||||| || ||||| || | ||| || | ||| ||| ||||||||| | || | Sbjct 3144 GCAGCGTGTCCACGTCGGTGGTGCTCACCGTGGCGTCGCTCAGGTACATGATGAAGCCGG 3203 Query 617 CGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGGATTCATTCAGCCACG 676 | || |||||||| ||| ||| |||||| |||| || |||| || ||||| | Sbjct 3204 CATGGCTGCCGTTCTCGTAGTACCGGCGGCGAAACATGGTGGCGGCCTCGTTCAGGTGGG 3263 Query 677 CAGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAAATCTCCTG 722 | || | | |||||| || || || |||| ||| || | |||||| Sbjct 3264 CCGACTGCAACGCGCTCAGGTACTCCGGCACGCCATACACCTCCTG 3309 >seq8149 Length=1767 Score = 201 bits (222), Expect = 2e-47 Identities = 363/524 (69%), Gaps = 10/524 (2%) Strand=Plus/Minus Query 15520 GCACTCGGCCTGCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAAC 15579 || || |||||||| || |||||||||| ||||||||||| || ||||| ||| Sbjct 1625 GCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGCTGTCCAAC 1566 Query 15580 GTT--GGTGTACAGGGCGTTACCGGCATCAGCGCCTCA-GTGTTCTGGGATTTGCAGGCA 15636 || | ||| ||||||| |||||| ||| | ||| ||||| |||| Sbjct 1565 GTGCCGTTGTC--GGGCGTTCTGGGCATCT-CGCGCGATGTGCATTGGGACCTGCAAAGC 1509 Query 15637 TCCGGCACCGATGCTGACCTGCTCAACGAGGCCGGGGTTACAACGCTGGTACGCAAGGAC 15696 ||| ||||| || | | | |||||| ||||||| | || |||||| | | | | Sbjct 1508 CCCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCAGAGCCAG 1449 Query 15697 GGTTTCCGCTTCTGGGGTAACCGCACCTGCTCGGATGACCCGCTTTTTCTGTTTGAGAAC 15756 || |||||||||||| ||||||||| |||| | ||| || | || ||| | Sbjct 1448 GGCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTTCGAGTCC 1389 Query 15757 TACACTCGCACCGCGCAGGTACTGGCCGACACGATGGCCGAGGCGCACATGTGGGCGGTC 15816 | |||||||||||||| ||||||||||| |||||||||||||| | ||||| || Sbjct 1388 AGCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTGGGCCGTG 1329 Query 15817 GACAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATTAACGCCAAATTC 15876 ||||||||||| | ||| || | ||||| | || ||||| ||| |||| ||| Sbjct 1328 GACAAGCCCATGCACCCCAGCCTGGTCAAGGACATCCTGGAAGGCATCAACACCAAGTTC 1269 Query 15877 CGCGAGCTGAAATCAAACGGCTACATCGTGGAGGGTAAATGCTGGTTCGATGAGGAATCG 15936 ||||| ||||| | ||||||||| |||| || || ||||| ||| || || | Sbjct 1268 CGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGTACGACGA--AACGG 1211 Query 15937 --AACGACAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGG 15994 ||||| | | || ||||||||||| || ||| | ||||||||||| || || | Sbjct 1210 TCAACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTACACGCCCG 1151 Query 15995 TTCCGCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGAT 16038 | || || ||||| |||| | |||||||| ||||||||| Sbjct 1150 TGCCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq24300 Length=517 Score = 158 bits (174), Expect = 2e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 29318 TTATGAGAATCAATATCACGTTGGATAAAGAACAAAAAATTAGTCAGGCAACATTGGATG 29377 ||||| | || | || | | | |||||||| || || || || ||||||||| |||| | Sbjct 257 TTATGCGCATTGAAATAATGATCGATAAAGAGCAGAAGATAAGCCAGGCAACACTGGAAG 198 Query 29378 CACTTGAGGCAGAACTGTACCGCAACCTTCAAGCTATTTACCCAAAGACTGCTATCCGCA 29437 | ||||| | || || ||||| || | | || |||| ||||| || || ||||||| Sbjct 197 CCCTTGAATCCGAGCTTTACCGAAATTTGCGCCCTCTTTATCCAAACACGGCAATCCGCA 138 Query 29438 TTCGCAAAGGCTCCGCAAATGGCGTTGAGCTAAGCGGTTTGAAACTGGACGAAGATAAAA 29497 | || || || ||| || ||| | ||||| ||||| || ||||||||||||||||||| Sbjct 137 TACGTAAGGGAAGCGCTAACGGCCTGGAGCTGAGCGGCTTAAAACTGGACGAAGATAAAA 78 Query 29498 AACGAGTAATGGAAATCATGCAGCAGGTATGGGAGGACGATAGCTGGCTGCATTAACAAA 29557 | || ||| |||| || |||||||||| |||||| || || |||||||||| | ||| Sbjct 77 AGCGGGTATTGGAGATTTTGCAGCAGGTCTGGGAGAGTGACAGTTGGCTGCATTGATAAA 18 >seq8333 Length=1724 Score = 114 bits (126), Expect = 3e-21 Identities = 341/509 (67%), Gaps = 23/509 (5%) Strand=Plus/Minus Query 15519 TGCACTCGGCCTGCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAA 15578 ||| || |||||||| || | | || ||| | ||||||||||| || | || || Sbjct 1166 TGCCCTGGGCCTGCGCGCCAAGCTGGATCAGGAGATTGGCTGGCACAAGTCCATTTCCAA 1107 Query 15579 CGTTGGTGTACAGGGCGTTACCGGCATCAGCGCCTCA-GTGTTCTGGGATTTGCAG-GCA 15636 | | | || | ||||| ||||||| ||| | ||||||| || ||||| || Sbjct 1106 CATGGTGGTCAACGGCGTGGAAGGCATCA-CGCGCGATGTGTTCTTCGACCTGCAGAGC- 1049 Query 15637 TCCGGC-ACCGATGCTG---ACCTGCTCAACGAGGCCGGGGTTACAACGCTGGTACGCAA 15692 ||||| | |||||| | ||||| || | ||| | | || |||||| | || Sbjct 1048 -CCGGCCAGCGATGCGGGCTACCTGAACAGCAAGGAAG---TCACCACGCTGATTCGGCG 993 Query 15693 GGACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCGGATGAC--CCGCTTTTTC-TGTT 15749 ||||| | ||||||||||||| ||||||||| || | | | | ||| || Sbjct 992 CGACGGATACCGCTTCTGGGGTTCGCGCACCTGCGAGGCCGCCGGCGGAAAGTTCGCCTT 933 Query 15750 TGAGAACTACACTCGCACCGCGCAGGTACTGGCCGACACGATGGCCGAGGCGCACAT-GT 15808 |||| |||||| |||||||| ||||| ||||||||||| || || || |||||| | || Sbjct 932 TGAGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTCGT 873 Query 15809 GGGCGGTCGACAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATTAACG 15868 | ||||||||||||| | || |||| | || ||||| | | | ||| ||| Sbjct 872 CTTC-ATCGACAAGCCCATGCACCCCTCGCTGGTGCGCGACATGCTGGGCTACATCAACA 814 Query 15869 CCAAATTCCGCGAGCTGAAATCAA--ACGGCTACATCGTGGAGGGTAAATGC-TGGTTCG 15925 | |||||||| ||| |||| |||||| || | | ||| ||||| | |||| Sbjct 813 GCCGCTTCCGCGATCTG--GTCAATGGCGGCTATCTCATCG-GGGCCAATGCGTACTTCG 757 Query 15926 ATGAGGAATCGAACGACAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACT 15985 | || ||||| ||||||| ||| | ||| ||| | ||| |||||||| Sbjct 756 ACCCCGATCTGAACGGCAAGGAAGACCTGGCCGTCGGCCGCCTGCAGATCAGCTACGACT 697 Query 15986 ATACACCGGTTCCGCCACTGGAAAGCCTG 16014 | || ||||| ||||| ||||| | |||| Sbjct 696 ACACGCCGGTGCCGCCGCTGGAGAACCTG 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97872277951764