Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq4513 562 8e-156 >seq4513 Length=2979 Score = 562 bits (622), Expect = 8e-156 Identities = 519/656 (79%), Gaps = 6/656 (1%) Strand=Plus/Plus Query 29791 CTCGGCTGCTGCCAGGCGCGTGCGCGAGATTTCGGCATACGCTGTCTCGCGCTCGATGCC 29850 ||||||| | ||||||| | || | ||| |||||||| || | | ||||| | ||| Sbjct 1230 CTCGGCTTCAACCAGGCGGTTCCGTGCGATCTCGGCATAGGCGGCCGACCGCTCCACGCC 1289 Query 29851 GATGAATCGTCGACCAGAAAGGACTGCAGCGACCCCTGTTGTGCCGCTTCCTGCGAACGG 29910 || ||||| || || | | | || || || || || ||||||||||| |||||||| Sbjct 1290 GACAAATCGGCGCCCGGTCATCAACGCTGCCACGCCCGTGGTGCCGCTTCCGGCGAACGG 1349 Query 29911 GTCTAGCACCAccccccccGGCATGACAGGCCGTACCAGTTCGCGCATCAGTGCCGTGGG 29970 || |||||||| || || |||| || || || ||||| |||| |||||| || ||||| Sbjct 1350 ATCCAGCACCACGCCACCAGGCACCACCGGGCGCACCAGCTCGCACATCAGCGCGGTGGG 1409 Query 29971 CTTGCCAGTCAGGTGGTGCTTGTCGTCGCGGCGCACGACGGCCTGGATGCAGCCGTCGAA 30030 |||||| |||| ||||||||||||||| ||||||| | || |||||||||||||| Sbjct 1410 CTTGCCGGTCATGTGGTGCTTGTCGTCCTGGCGCACAGGCACGTGCATGCAGCCGTCGAA 1469 Query 30031 CGGGCCATCGTGCTCCAACTGCACGGCCGCGCCCTTGGTGCCCCACACCACGTATTCGCA 30090 ||| |||||||| |||| |||||| |||| || |||||||||||||||||||||||||| Sbjct 1470 CGGTCCATCGTGATCCAGCTGCACCGCCGGCCCTTTGGTGCCCCACACCACGTATTCGCA 1529 Query 30091 CTGGTGCCGGAAATATCCTTTGTGCGGCGCCCGGGCGCCACGGCCCTTGTCCCAGGCGAT 30150 |||||| ||||| || || || ||||| || || || | |||||||||||||| || | Sbjct 1530 CTGGTGGCGGAAGTAGCCCTTATGCGGTGCGCGTGCCGCGCGGCCCTTGTCCCAAGCCAC 1589 Query 30151 GAGGCCGCGCCAGAACACGCCGCCGGCCTGCACCGCGTCGGACATCAGCGGCAGTTGGCG 30210 | |||||||||||||||||| ||||||||| |||| || | ||||| |||||| || || Sbjct 1590 CACGCCGCGCCAGAACACGCCACCGGCCTGCGCCGCATCCGTCATCACCGGCAGCTGCCG 1649 Query 30211 CCAGTCGGTGAAGGCCATGAAGTAGCCGCCGGGCTTGAGCACGCGCACGCACTCGGCGAT 30270 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1650 CCAGTCCGTGAAGGCCATGAAGTAGCCGCCAGGCTTGAGCACGCGCACGCACTCGGCTAT 1709 Query 30271 CCACAAGGAACACCAAGTCAGATAGCTGCGCTGGTCGCGCGAGTCGCCGGAAAACGTCGG 30330 ||||| ||||| | ||||||||| ||||||||||||||||||||| || || || Sbjct 1710 CCACAGCACGCACCAGGCCAGATAGCTCCGCTGGTCGCGCGAGTCGCCGCCGAAGGTGGG 1769 Query 30331 GTA---GCGCCCCTGCGAGCCGCTTTGCGTGTACTTCGCGTCGGGGTCTTTGGCCTTGTC 30387 ||| | ||| || || | ||| ||||||| ||||| | || | |||||| Sbjct 1770 GTACTTGTCGCCCAGC---CCTGTCTGCTGGTACTTCAGCTCGGGCGCCTTCGTCTTGTC 1826 Query 30388 GTCGCGCGAGAACCCGCCGCTGCTGTAGGGTGGGTCGGTGATAACGGCGTCCACGC 30443 |||||||| ||| || ||||||||||| || ||||||||||| || || ||||||| Sbjct 1827 GTCGCGCGTGAAGCCTCCGCTGCTGTACGGCGGGTCGGTGATGACTGCATCCACGC 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135798665286690