Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7414 89.7 4e-13 seq2166 84.2 2e-11 >seq7414 Length=1926 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/205 (71%), Gaps = 8/205 (4%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || ||| || | |||||||||||||| ||| || | Sbjct 33 CTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 92 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| ||||||||||| || || | | |||||||||| ||| ||| ||| | | Sbjct 93 AATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTCGTCTTCACGTT 152 Query 48653 GACGCTATGGTATCGGTAGACTC--CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | || || | || | ||||| |||| || || || || || || || | || | Sbjct 153 GTCG--ATCGAGTCCGACGACTCGACGTCAAGA--GTGATCGTCTTGCCCGTCAACGTCT 208 Query 48711 TCACAAAAATCTGCATCGTGTCTTG 48735 |||| |||||||||||| ||||||| Sbjct 209 TCACGAAAATCTGCATCTTGTCTTG 233 >seq2166 Length=5462 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || |||||||| || | | ||| | ||||| |||||||| ||| | || Sbjct 773 CCTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAA 832 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||| || ||| | || |||||| ||| ||||||||||||| | Sbjct 833 ATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTG 892 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||| |||| | |||| || | || ||||| || ||||| || || |||||| Sbjct 893 TCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACA 952 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 953 AAGATCTGCAT 963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421068742809539