Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq20301 370 6e-98 seq15573 205 6e-48 seq4487 129 4e-25 seq29522 107 1e-18 seq9150 100 2e-16 >seq20301 Length=662 Score = 370 bits (410), Expect = 6e-98 Identities = 420/563 (75%), Gaps = 0/563 (0%) Strand=Plus/Plus Query 72072 CGCGTTGATCAGACTCGTATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTT 72131 ||||| || ||||| || ||||| || || || || |||||||||| ||||||||| | Sbjct 1 CGCGTGGACCAGACCCGCATTCGTACCGGCCAGCTGGACGACGAGGACTGGGCGCGGATC 60 Query 72132 TCTGGCGCAATGGGTATTCTGTTGGACAAGCAGAATATTTTTATTGATGACTCAAGCGCC 72191 || ||| | |||||||||||| |||| || | ||| || | ||| |||||||| || | Sbjct 61 TCCGGCACCATGGGTATTCTGCTGGAAAAACGGAACATCTATATCGATGACTCCTCCGGC 120 Query 72192 CTGACGCCGACAGAGCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTG 72251 ||||||||||| || | || |||||||| || || | || | || || | Sbjct 121 CTGACGCCGACGGAAGTGCGCTCCCGCGCGCGCCGAATCGCCCGCGAGCACGGCGGCATT 180 Query 72252 AGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAAGATAACCGA 72311 || |||| |||||||||||||| || || |||||||| || |||| || ||||| Sbjct 181 GGCCTGATCATGATCGACTACCTCCAGCTGATGCGCGTTCCATCGCTGTCGGACAACCGT 240 Query 72312 ACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTA 72371 || |||||||||||||| || || ||||| ||||| || ||||||| || || || || Sbjct 241 ACTCTGGAAATTGCCGAAATCTCCCGCTCGCTGAAAGCACTGGCGAAAGAGTTGCAGGTG 300 Query 72372 CCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCG 72431 ||||||||||| |||| || ||||| || || || || |||||||| ||||| || ||| Sbjct 301 CCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCCCTGGAGCAGCGTGCCGACAAGCGTCCG 360 Query 72432 GTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTT 72491 || || || ||| | |||||||| || | || |||||||| || ||| | || ||||| Sbjct 361 GTCAACTCCGATCTGCGTGAATCGGGCTCCATCGAGCAGGATGCCGACTTAATCATGTTC 420 Query 72492 CTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATT 72551 | ||||| || || || |||||| | | ||||| |||| ||||| || || | ||| Sbjct 421 ATCTATCGTGATGAGGTCTATCACGAGAACAGCGACCTGAAAGGCATCGCAGAAATTATT 480 Query 72552 ATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATAC 72611 || || ||||| || || |||||||| || |||||| | || | ||||||||||||| Sbjct 481 ATTGGTAAGCAGCGTAACGGCCCAATCGGTACGGTGCGTCTGACCTTTAACGGCCAATGG 540 Query 72612 TCACGGTTTGATAACTATGCCGG 72634 ||||| || || |||||||| || Sbjct 541 TCACGCTTCGACAACTATGCGGG 563 >seq15573 Length=905 Score = 205 bits (226), Expect = 6e-48 Identities = 275/378 (73%), Gaps = 5/378 (1%) Strand=Plus/Minus Query 72254 CATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAG-CTGCAAG--ATAACCG 72310 |||||| ||| ||||||||||||| || |||| |||| | | | || | | ||||| Sbjct 599 CATGATCATGGTCGACTACCTGCAGCTGATGCAGATCCCGGGGTCGGCCGGTGACAACCG 540 Query 72311 AACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGT 72370 || |||||| |||||||||| ||||| || ||||| |||| || ||||| ||| | Sbjct 539 TACCAACGAAATTTCCGAGATTTCCCGCTCGCTCAAGGCCCTGGCCAAAGAATT-CAACT 481 Query 72371 ACC-GGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGAC 72429 || ||| | || | || || || || || ||| | || ||||| || ||||||| | Sbjct 480 GCCCGGTCATTGCCCTTTCGCAGCTGAACCGCTCGTTGGAGCAGCGCCCGAACAAACGCC 421 Query 72430 CGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGT 72489 |||| || || || || |||||||| || ||||| ||||||||||| ||| |||| |||| Sbjct 420 CGGTGAACTCCGACTTGCGTGAATCTGGTGCAATCGAGCAGGACGCCGACGTGATCATGT 361 Query 72490 TTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAA 72549 | |||| |||||||| || || ||||| || | ||| |||||| | || || | | Sbjct 360 TCGTGTACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAGGGCGTGGCGGAAATCA 301 Query 72550 TTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAAT 72609 | ||||| || || || || ||||| || || ||| | ||||| |||| |||| | | Sbjct 300 TCATCGGCAAACAGCGTAACGGCCCCATCGGTTTCGTGCGTTTGGCGTTTATCGGCAAGT 241 Query 72610 ACTCACGGTTTGATAACT 72627 || | ||||| || |||| Sbjct 240 ACACCCGGTTCGAGAACT 223 >seq4487 Length=2993 Score = 129 bits (142), Expect = 4e-25 Identities = 226/326 (69%), Gaps = 5/326 (2%) Strand=Plus/Minus Query 72253 GCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA-GATAACCGA 72311 || |||| |||||||||||||||| || ||| |||| || | || || || ||||| Sbjct 559 GCCTGATCGTGATCGACTACCTGCAGCTGATGAGCGTGCCGG-GCAACAGCGAAAACCGC 501 Query 72312 ACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTA 72371 || || || | ||||| || || || |||||| |||| |||||||| | || Sbjct 500 GCGACCGAGATCTCGGAGATCTCGCGTTCGTTGAAGGGCCTGGCCAAGGAATTGAATGTG 441 Query 72372 CCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCG 72431 |||||| | || ||||||| || || || ||||| ||| |||| | ||||| || ||| Sbjct 440 CCGGTGATCGCGCTGTCACAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCG 381 Query 72432 GTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTT 72491 || | | || | || || || || ||||| ||||||||||| ||| |||| |||| Sbjct 380 GTGATGGCCGACCTTCGCGAGTCGGGCGCAATCGAGCAGGACGCGGACATGATCGTGTTC 321 Query 72492 CTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATG---AAGGGCATTGCCGAGGTA 72548 | || |||||||| || || ||| | | | |||||| | |||||| | Sbjct 320 ATCTACCGCGACGACTACTACAACAAGGAAAACTCGCCGGACAAGGGCCTGGCCGAGATC 261 Query 72549 ATTATCGGAAAGCAACGAAATGGCCC 72574 || ||||| ||||| || |||||| Sbjct 260 ATCATCGGCAAGCACCGTGGTGGCCC 235 >seq29522 Length=371 Score = 107 bits (118), Expect = 1e-18 Identities = 73/82 (89%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 70932 CGGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAG 70991 |||||| ||||||||||||||||||| |||||||||||||||| |||| | |||||||| Sbjct 201 CGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAG 260 Query 70992 TCCGGTAGGGGCCACCATATTT 71013 ||| | ||||||||||| |||| Sbjct 261 TCCAGCAGGGGCCACCAAATTT 282 >seq9150 Length=1571 Score = 100 bits (110), Expect = 2e-16 Identities = 178/257 (69%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 72250 TGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA-GATAAC 72308 || || |||| |||||||||||||||| || ||| || || | || || || ||| Sbjct 332 TGGGCCTGATCGTGATCGACTACCTGCAGCTGATGTCGGTGCCGG-GCAACAGCGAGAAC 390 Query 72309 CGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAA 72368 || | || || | ||||| || || || |||||| | || |||||| | | Sbjct 391 CGCGCCACCGAGATCTCGGAGATCTCGCGTTCGTTGAAGGGCCTCGCAAAGGAACTCAAC 450 Query 72369 GTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGA 72428 |||||||| | || |||| || || || || ||||||||| |||| | ||||| || Sbjct 451 GTACCGGTCATCGCGCTGTCGCAGCTCAACCGCTCGCTTGAAACGCGTACCGACAAGCGC 510 Query 72429 CCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATG 72488 ||||| | | || | || ||||| || || || ||||||||||| ||| |||| | Sbjct 511 CCGGTGATGGCCGACCTTCGCGAATCGGGCGCCATCGAGCAGGACGCCGACATGATCGTC 570 Query 72489 TTTCTGTATCGCGACGA 72505 || | || |||||||| Sbjct 571 TTCATCTACCGCGACGA 587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303103859264019