Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq16939 102 2e-17 >seq16939 Length=822 Score = 102 bits (112), Expect = 2e-17 Identities = 198/288 (69%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 1580 GCAGCTCGACGATTACTTGACGGCGTCCTTCAGCCCCTTGCCGGCCTTGAACTTCGGGGC 1639 ||||| | |||||| || ||||| |||||||| | ||||| ||||||||| |||| Sbjct 584 GCAGCAAGTCGATTAGTTTACGGCATCCTTCAGGGCTTTGCCAGCCTTGAACG-CGGGAT 526 Query 1640 T-TTCGACGCTGGAATCTTGATTTCTTCGCCGGTGGCGGGATTCCGTCCGGTACGGGCGG 1698 | || || || |||||||| |||||||| || || || ||||||||||||| Sbjct 525 TCTTGGAGGCCTTGATCTTGATCGTGTCGCCGGTCTTCGGGTTGCGGCCGGTACGGGCGG 466 Query 1699 CCCGCGCGCCCACGCTGAATACGCCGAATCCCGTCAGCGTCACCGTGTCGCCCTTGCGCA 1758 | ||| || || ||| |||||| || ||||||||| |||||||||| | Sbjct 465 CGCGCTTGCGGACCTGGAAGGTGCCGAAGCCGACCAGCGTCACGCTGTCGCCCTTCTTGA 406 Query 1759 GCGACTTCGTGATGCCTTCGAGA--ACGGCTTCCAGCGCAAAGCCGGAGTCGGTTTTCGT 1816 | | ||| ||||||| | |||| ||||| || | || ||||| |||| || | Sbjct 405 GGGCCTTGGTGATGC--TGGAGATGACGGCGTCGACGGCGCGGCCGGCTTCGGCCTTGGA 348 Query 1817 CATGCCCGTTTCTGCCGCCACGTGATTGATCAGGTCCGATTTGTTCAT 1864 || | | ||| | || ||| || ||||| || | ||||||||| Sbjct 347 CACTTCGGCTTCGTCGGCGACGGCATCGATCAATTCGGTTTTGTTCAT 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117422423805780