Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq1293 143 7e-30 >seq1293 Length=7953 Score = 143 bits (158), Expect = 7e-30 Identities = 187/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 23995 GACCTCGGCCCACTGCTCGAGCGCGAGGCGGCGCTCGGGAATCTCCTGCCGCACATCGTA 24054 || || |||||| || | | |||||||||||| || || || |||| ||||| || || Sbjct 3810 GAACTTGGCCCATTGGCCCAACGCGAGGCGGCGTTCTGGGATGTCCTCGCGCACGTCATA 3869 Query 24055 AATCCCTTCCATGCCTCGCAGCTTGTGGTTCAGCGCGATCTCGGTGATCTCTTTCGGGAT 24114 || || |||||||| ||||||||||||||||| || |||| ||||| | ||| Sbjct 3870 GATACCCTCCATGCCCTTGAGCTTGTGGTTCAGCGCAATTTCGGAAATCTCACGAGAGAT 3929 Query 24115 ACCCATATTCATCATGTGGCCCTTGGCCGTGCTGCGCGTGTCGTGCGGTGTGAAGCGCCG 24174 |||||||| || ||| ||||| ||||||||||| |||||||| || || || Sbjct 3930 TCCCATATTTCGCAGGTGCCCCTTCGCCGTGCTGCGAGTGTCGTGGACCGTAAAACGGGT 3989 Query 24175 GGCTTCGAGATCGCCTCGCAGGAACGCCCGATCGATAGCCGCCCACAGCGTCGTGTTGCC 24234 | | || || || || || || ||||| |||||| ||||| || ||||| | || Sbjct 3990 GACATCCAGTTCACCGCGTTCAAAGGCCCGGGTGATAGCTGCCCAGAGGGTCGTTCTTCC 4049 Query 24235 GACGTGCGTGTTGCCAAGC 24253 ||| ||||||| ||| || Sbjct 4050 GACATGCGTGTCCCCATGC 4068 Score = 100 bits (110), Expect = 8e-17 Identities = 127/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 25015 GTCGGGGTAGTTGCCGAGCGTCAGCTCGCGCCGGCGGCCGCCGGCCAGCCGGTAGCGCAG 25074 ||| |||||||| || | |||| || || ||||| || || ||||||||||| | ||| Sbjct 4821 GTCCGGGTAGTTCCCAATGGTCACTTCCCGGCGGCGCCCCCCCGCCAGCCGGTACCTCAG 4880 Query 25075 AACCCATGCCGCAGTGCCGCTGGCCGAAAGGGTGAAGGTGAGGCCGCCGCCGTCGGATTT 25134 |||||| || || ||||| ||||| || || ||||| || ||||| |||| |||||||| Sbjct 4881 AACCCACGCGGCTGTGCCACTGGCAGACAGCGTGAAAGTCAGGCCATCGCCATCGGATTT 4940 Query 25135 CGCGACCGGTTGT-CCGGCCGAGATCCAGCGCCGCAGCTGCAGGTCGTCGAG 25185 || | | | || | || | |||||||| || | ||| | ||| | ||| Sbjct 4941 -GCTAACTGGAGTGCTTGCGGCAATCCAGCGTCGTATCTGTAAGTCATTGAG 4991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135549170624286