Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq2111 87.8 2e-12 >seq2111 Length=5547 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||| || || || || || | ||||| ||||| || || ||||| | ||| | | || Sbjct 3415 ATAGATGTGCGCGTCACCAAAAGTATGGATAAAATCTCCCGGTTTTAAATCGCAAACCTG 3356 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 |||||| | |||| |||||||||||||| |||| |||||||| || ||||| || Sbjct 3355 AGCAATCATCAATGTCAATAATGCATAAGATGCTATGTTAAAAGGCACTCCTAAAAAGAT 3296 Query 6960 ATCTGCTGATCTTTGATAACATTGACAAGATAA 6992 ||| || ||||||||| | || || ||||| Sbjct 3295 ATCGGCGCTTCTTTGATATAACTGGCAGGATAA 3263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595607291312400