Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq3451 113 4e-20 seq4977 86.0 6e-12 >seq3451 Length=3754 Score = 113 bits (124), Expect = 4e-20 Identities = 159/220 (72%), Gaps = 5/220 (2%) Strand=Plus/Minus Query 94214 TTCAGCAGCAGCACCCCGCGGCGCGCCCAGGCCTCCAGGCAGCCGTGGGC-GGGCGCGGG 94272 || ||||||||||| ||||| ||||||| | ||||||||||||| | ||||||||| Sbjct 2878 TTGAGCAGCAGCACGCCGCGCTGCGCCCACGGGATCAGGCAGCCGTGGTCCGGGCGCGGG 2819 Query 94273 CAGCGTCGGGTACGTCGCCCGGACCGCCGCGAAGATGTTGGCCAGGCTCGGGGGGATCGG 94332 | || | || | | || | || | ||||||| ||| ||| || | ||| Sbjct 2818 ATAC--CGAGATCG--GTCTCGATCTCCTTGTAGATGTTCAGCAGCGACGGCGGCACCGG 2763 Query 94333 CACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTACGGGTC 94392 ||| ||| || | || ||| ||| || || |||||||| |||||||||||||||| Sbjct 2762 CACGCCGGGCGGTACCGAGAAACTCAGGCCATGTGCCTGGCCGCGCCCGTGGTACGGGTC 2703 Query 94393 CTGGCCGATGATGACCACCTTGACGTCCTCGGGCGCCGTG 94432 |||||||| ||| |||||||| || | |||| || |||| Sbjct 2702 CTGGCCGAGGATCACCACCTTCACCTGCTCGAACGGCGTG 2663 >seq4977 Length=2742 Score = 86.0 bits (94), Expect = 6e-12 Identities = 295/453 (65%), Gaps = 39/453 (9%) Strand=Plus/Minus Query 94009 GGCCAGCGGCGACGGATGGCTGAAGGTGAGCACCTTGTGGCGGCGCGGGTCCGGCGCG-- 94066 || ||||||||| || ||| || ||||||||||| ||| | ||| | | || | Sbjct 2091 GGACAGCGGCGAGGGGTGGTTGGAGGTGAGCACCAGGTGCCCGCGATCGGCAGGGATGAA 2032 Query 94067 CAGGCCTTTTGA----GCGTGGGCGCCCCAGAGCATGAACACCAGCTTGGGGCGGGTCTC 94122 || || || || ||||| | |||||| ||||||||||||| |||| | || | Sbjct 2031 CACGCGCTTGGACTGCGCGTGCGAGCCCCACAGCATGAACACCAC----GGGCCGCTCGC 1976 Query 94123 GCAGAGCCGCTGGACG----ACGGCGCGCACGAGCCGCGCCCAGCCGA-----GCGGGGC 94173 | ||| | | || || || |||| || ||||||| ||| ||| Sbjct 1975 CCTCGGCCACATGGCGGATCACCTCGTCGGTGAGCAGCTCCCAGCCCTTGCCCGCGTGGC 1916 Query 94174 GTGGGAGCCGGGGACCCCGCGCCGCACGGTCAGCGTCGTGTTCAGCAGCAGCACCCCGCG 94233 ||| ||| || ||| | | |||||| || ||||| ||||||||||| ||| Sbjct 1915 -TGGCCGCCTGG---CCCTCTTC-CACGGTGAGGCCGGTGTTGAGCAGCAGCACGCCGTT 1861 Query 94234 GCGCGCCCAGGCCTCCAGGCAGCCGTGGGCGGGCGCGGGCAGCGTCGGGTACGTCG---C 94290 |||||| |||||| |||| | ||| |||| | || ||| ||| || | Sbjct 1860 CTTCGCCCACTTGACCAGGCTGCCGC---CCGGCTCGGGGAAGGTGGGGAACGGCGTATC 1804 Query 94291 CCGGAC-CGCCGC--------GAAGATGTTGGCCAGGCTCGGGGGGATCGGCACCCCGCG 94341 | || | ||| || |||||||||| ||| || || | | |||| ||| | Sbjct 1803 CAGGTCGCGCTGCATCTCTTTGAAGATGTTGCGCAGCGAGGGCGGCAGCTGCACGCCGGG 1744 Query 94342 CCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGTGGTACGGGTCCTGGCCGAT 94401 | || ||| |||| ||| | ||||||||| | ||||||||||||||||| || | Sbjct 1743 CGCCACCGAGAACGCCAACCCCTCGGCCTGGCCGCGGCCGTGGTACGGGTCCTGCCCCAG 1684 Query 94402 GATGACCACCTTGACGTCCTCGGGCGCCGTGAG 94434 ||||||||| || ||||||||| |||||| Sbjct 1683 GATGACCACGCGCACCGCCTCGGGCGGCGTGAG 1651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458743318443240