Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25614 129 5e-25 seq31848 113 4e-20 seq32362 109 5e-19 seq7414 109 5e-19 seq14623 104 2e-17 seq19645 100 3e-16 seq34320 87.8 2e-12 seq34564 86.0 6e-12 seq2166 86.0 6e-12 >seq25614 Length=477 Score = 129 bits (142), Expect = 5e-25 Identities = 187/263 (71%), Gaps = 1/263 (0%) Strand=Plus/Plus Query 94748 TTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| ||| ||| || |||||||| | || | |||||| || Sbjct 10 TTTACCTGTAAGGGTTTTCACAAAGATTTGCATGCCTCCTCTTAGACGAAGCACCAAATG 69 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTT 94866 || || ||||||||||| | || ||||| || || || |||||||||||| || Sbjct 70 CAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCCTCCAGCTGCTT 129 Query 94867 TCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGC 94926 || | ||||| | || ||||| || || ||||| ||||| ||||| | || || || Sbjct 130 ACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGC 189 Query 94927 CTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 ||||||| | | | ||||| | | || || || | || || || |||||||| || Sbjct 190 CTTGACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGTCTTTCCAGTTAG 249 Query 94987 AGTTTTCACAAAGATCTGCATGC 95009 ||||| |||||||| ||||||| Sbjct 250 TGTTTTTACAAAGATTTGCATGC 272 >seq31848 Length=311 Score = 113 bits (124), Expect = 4e-20 Identities = 112/143 (78%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||| || | ||| | || |||||||| || | |||||||||| | ||||| | Sbjct 170 CGCAAGACAAGGTGGAGGGTTGATTCCTTCTGGATGTTATAATCGGCGA--GTGTTCGGC 113 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||||||||| || ||| ||||||| | ||| ||||||||||||||||||||||| | Sbjct 112 CATCCTCCAGCTGCTTCCCGGCAAAGATGAGTCTCTGCTGATCTGGAGGAATACCTTCCT 53 Query 94911 TGTCATAAATTTTTGCCTTGACG 94933 |||| | ||| || ||||| ||| Sbjct 52 TGTCTTGAATCTTAGCCTTCACG 30 >seq32362 Length=298 Score = 109 bits (120), Expect = 5e-19 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 94771 ATTTT--ACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||||| |||| || || | || ||||| || | ||| | ||||||||||| || | | Sbjct 243 ATTTTCAACAC-CCACCACGCAGACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATG 185 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||||||| || ||| ||||||||||||||| || |||| || | || ||| Sbjct 184 TTATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGC 125 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| || ||||| ||||| ||||| | |||||| || || ||| | | || || Sbjct 124 TGATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTCGCTTTTACGTTATCAATCGTATCG 65 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||| || || || || | || |||||||| |||||||| Sbjct 64 GAGCTCTCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCACAAATATCTGCAT 6 >seq7414 Length=1926 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||||| || || ||||| || | ||| || ||||||| ||| | |||||| Sbjct 15 CACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTC 74 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | || || || | ||||| || |||||||| ||||| ||||| | Sbjct 75 CAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTG 134 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| ||| | ||| | ||| | |||||||||| ||||| || || Sbjct 135 AATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTT 194 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || ||||| || |||||||| Sbjct 195 GCCCGTCAACGTCTTCACGAAAATCTGCAT 224 >seq14623 Length=969 Score = 104 bits (114), Expect = 2e-17 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTC 94857 |||| |||| || |||||||| || | || |||||| || || ||| | ||| || Sbjct 241 CAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGG-CA-AGGGTTCGGCCATCTTC 184 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| ||||| |||| || | | || || || || ||||| ||||| || || | Sbjct 183 CAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTG 124 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||||||||| || | | | ||||||| | ||||| |||| |||||||| || Sbjct 123 GATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTTCAAGAGTGATGGTCTT 64 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||||||||||| || ||||| ||||| Sbjct 63 GCCGGTAAGAGTTTTGACGAAGATTTGCAT 34 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| || | || | ||||| |||||||| || || | || || || | Sbjct 944 CCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAG-C 886 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | ||| || ||||||||||| ||||||| | | ||||| || || | Sbjct 885 A-AGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGG 827 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || || ||||| || | ||| ||||| | | || | Sbjct 826 GGATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCA 767 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | || ||||| || || || || ||||| |||||||||||||||| Sbjct 766 CTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCATGC 716 >seq19645 Length=690 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || ||| ||||||| | || ||||| || |||||||| || || || Sbjct 503 ATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTT 444 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||||||||||| ||| ||||| | | || || || | || || Sbjct 443 GTCCTGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTAT 384 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || || || || || ||||| ||||||||||||| Sbjct 383 GGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATGC 346 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| |||| | | ||| | ||| | || || ||||| || | |||||| || Sbjct 346 CCTCCCCTCAGCCTGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCG 287 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||| ||||| || ||| | || || | || ||||| || || ||| Sbjct 286 AGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGA 227 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || |||||||| | | | ||||| | | || || Sbjct 226 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACC 167 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||||||| || || ||||| || ||||| ||||||||||| Sbjct 166 TCGAGCGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 >seq34320 Length=242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || || | ||||| | || ||||| || || || || ||||| || Sbjct 33 ATCCTCGAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCTTCCTT 92 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||||||| | ||| ||||| | | ||||| || | ||||| Sbjct 93 GTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGAT 152 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || || || ||||||||||| Sbjct 153 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 188 >seq34564 Length=234 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| | || ||||| || ||||| || || || ||| Sbjct 208 TCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTG 149 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| ||||| | | || || || | |||||| Sbjct 148 TCCTGGATCTTGGCCTTCACGTTATCGATGGTGTCCGAGCTCTCCACCTCGAGGGTGATG 89 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || |||||||||||||||| Sbjct 88 GTCTTCCCGGTGAGGGTCTTGACAAAGATCTGCATGC 52 >seq2166 Length=5462 Score = 86.0 bits (94), Expect = 6e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| || ||| |||| || | | ||||| || || ||||||||||| || Sbjct 808 ATCCTCGAGCTGCTTGCCGGCAAAAATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTT 867 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| |||||| | | | ||| | | || ||||| | |||||| Sbjct 868 TTCCTGGATTTTCTGCTTGACATTGTCAATGCAGTCGGACGGCTCCACGTCCAACGTGAT 927 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || || || || || |||||||||||||||||| || Sbjct 928 GGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATGATT 967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448092052238040