Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq266 159 5e-35 seq746 131 3e-26 >seq266 Length=20885 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || || |||||||| || || || ||||| || || Sbjct 16845 CGCCAAGCGTCATCGCAAGGTTCTCCGTGACAACATCCAGGGTATTACGAAGCCTGCCAT 16904 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||| ||||||||||| || |||||| ||||||| || |||| || |||| Sbjct 16905 TCGTCGTCTGGCACGTCGTGGTGGTGTGAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 16964 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | ||||| ||| || || | || | | || || || Sbjct 16965 CCGTGGAGTCCTGAAGGTGTTCCTGGAGAATGTGATTCGCGACTCGGTGACGTACACGGA 17024 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| |||||||| || || |||||||| |||| ||||| ||||| || || || Sbjct 17025 GCACGCTCGTCGTAAGACAGTGACGGCCATGGATGTCGTGTATGCTTTGAAGCGCCAGGG 17084 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || ||||| ||||| Sbjct 17085 ACGTACTCTGTACGGATTTGGTGGTTAA 17112 >seq746 Length=11712 Score = 131 bits (144), Expect = 3e-26 Identities = 185/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| |||||| || |||||||| || ||||||||||| ||||| Sbjct 611 GCGAAGCGTCATCGCAAGGTTCTTCGTGACAACATCCAGGGTATCACCAAGCCGGCTATT 670 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| || || |||||| | || || || | || || |||| Sbjct 671 CGTCGTCTGGCACGTCGTGGCGGTGTAAAGCGTATTTCCGGCCTGATTTACGAGGAGACC 730 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | || || ||| |||||| | ||| || | || || || Sbjct 731 CGCGGCGTTCTTAAGGTTTTTCTTGAGAACGTTATTCGTGACTCTGTGACGTACACGGAA 790 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || ||||| || || || | ||||| | || || || |||| || || ||| Sbjct 791 CATGCCCGCCGTAAAACGGTGACTGCAATGGACGTTGTGTACGCCCTGAAGCGCCAGGGC 850 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||| ||||| || Sbjct 851 CGTACCCTTTACGGTTTCGG 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79042706443527