Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_006938.1 Length=63649 Score E Sequences producing significant alignments: (Bits) Value seq13677 127 8e-25 seq19051 111 6e-20 seq2903 98.7 4e-16 >seq13677 Length=1044 Score = 127 bits (140), Expect = 8e-25 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 9397 ACCTCTGGGAGATGATCATGCGGTCCACGTGGGACTGGGCCGAGCCCGGCACCCTGTTCA 9456 |||| ||||| ||||||||| || |||| |||| |||||||| ||| | | | | Sbjct 643 ACCTGTGGGACATGATCATGGTCTCGACGTACGACTACGCCGAGCCGGGCTTCATCCTGA 584 Query 9457 TCGACCAGATCAACCGCATGAACAATCTCAAGTACTGCGAGACCATCGCCGCCACCAATC 9516 |||||| ||||| |||||||| | || |||||||||||| ||| ||||| | Sbjct 583 TCGACCGCGTCAACGAGATGAACAACAACTGGTGGTGCGAGACCATCCGCGCGACCAACC 524 Query 9517 CCTGCGGCGAGCAGCCCCTCCCACCGTACGGTGCCTGCCTCTTGGGCTCCTTCAACCT 9574 | |||||||||||||| || || |||||||| |||||||| ||||||| ||||||| Sbjct 523 CGTGCGGCGAGCAGCCGCTACCGCCGTACGGCGCCTGCCTGCTGGGCTCGGTCAACCT 466 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 9127 CCTCCGGGCCGCTCTCCTTCATGCAGATCTACGACTCCGTGTGCAAGTGCGTCGCCAGCT 9186 ||||||| ||| | ||||||||| | ||||||||| ||||| ||| || | Sbjct 1024 CCTCCGGCCCGATGTCCTTCATGGATATCTACGACAAGATGTGCTTCACCGTGTCCTCCG 965 Query 9187 CTGGCCACCGCCGTGGCGCGCAGATGGGCGTCCTCCGAGTGGACCACCCGGACATCGAGG 9246 | ||| |||||| ||||||||||||||| || | | |||||||||| || ||| Sbjct 964 CCGGCGGCCGCCGCGGCGCGCAGATGGGCACGTTCGAAATCTCCCACCCGGACGTCAAGG 905 Query 9247 AGTTCATTCGCGCCAAGCACAACGAGGACAACCTCACCGGGTTCAACACCTCCATCGCCA 9306 | ||||| |||||||||| | | || | | ||| | ||||||| || | | Sbjct 904 ACTTCATCCGCGCCAAGCGCGAAGACGGCCGCCTGCGCCAGTTCAACCTGTCGCTGCTGA 845 Query 9307 TCACCGACCGCTTCATGGA 9325 |||||||| |||||||||| Sbjct 844 TCACCGACGGCTTCATGGA 826 >seq19051 Length=719 Score = 111 bits (122), Expect = 6e-20 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 9874 CCTATCAGGCCTCCGTCGAGCTGGCCCAGGAGAAGGGCGCGTTCCCGC---TGTACGACG 9930 ||||| |||||| |||||||||||| |||| |||||||| ||||| | | ||| || Sbjct 603 CCTATGCGGCCTCGGTCGAGCTGGCCAAGGAAAAGGGCGCCTTCCCCCGTTTCGACGCCG 544 Query 9931 AGCGCTACCTGGACTCTGAATACGTCCGCCAG-GTCCTTCCAGAGGAGCTCCAGGAGGAC 9989 || ||||||||| | | | || | |||||| || || ||| ||| ||||||| | Sbjct 543 AGGGCTACCTGG-CGCCGGGCACCTTCGCCAGCCGGCTGCCGCAGGCGCTGCAGGAGGCC 485 Query 9990 ATCGGCCGCTACGGGATACGCAACTCCCACCTCACGTCCATCGCTCCCACAGGGACGATC 10049 ||| ||| |||| || |||||| |||||| ||||||||| ||||| || ||| | Sbjct 484 ATCCGCCAGCACGGCATCCGCAACAGCCACCTGCTGTCCATCGCGCCCACGGGCACGGTG 425 Query 10050 TCGCTGAC---GGCGGACAACGTGTCCTCTGGCATCGAGCCG 10088 ||| | |||||||||| ||| |||||||| ||| Sbjct 424 AGCCTGGCCTTCGCGGACAACGCCTCCAACGGCATCGAACCG 383 >seq2903 Length=4332 Score = 98.7 bits (108), Expect = 4e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 9429 GACTGGGCCGAGCCCGGCACCCTGTTCATCGACCAGATCAACCGCATGAACAATCTCAAG 9488 |||| |||||||| |||| ||| ||| | |||| |||||| ||||| || Sbjct 342 GACTTCGCCGAGCCGGGCATCCTCTTCCTGGACCGCATCAACGAGGACAACAACCTGCGC 283 Query 9489 TACTGCGAGACCATCGCCGCCACCAATCCCTGCGGCGAGCAGCCCCTCCCACCGTACGGT 9548 ||||||||| |||||||||||||||||||||||||||||||||||| || | ||||| Sbjct 282 TACTGCGAGGACATCGCCGCCACCAATCCCTGCGGCGAGCAGCCCCTGCCGTCCTACGGC 223 Query 9549 GCCTGCCTCTTGGGCTCCTTCAACCTC 9575 |||| | |||| | ||| |||| Sbjct 222 TGCTGCGACCTGGGGCCGGTCATCCTC 196 Score = 84.2 bits (92), Expect = 9e-12 Identities = 165/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 9031 AGGCCGCCGCCACCATGCGGATGGGAGGTGGCATCGGCTACGACTTCTCCACCCTCCGTC 9090 ||||||||| ||||||||| || |||||| | |||||||||||||| | |||| | Sbjct 794 AGGCCGCCGAGACCATGCGGCGCGGCGGTGGCGTGGGCTACGACTTCTCGCGCATCCGGC 735 Query 9091 CCAACGGAGCCCTCATCAAGAAGCTCCAG-TCGCGGTCCTCCGGGCCGCTCTCCTTCATG 9149 | || |||| | ||||| || | |||| | | ||||||||| | || ||| Sbjct 734 CGCGGGGCGCCCGCGTCAAGG-GCACGGCCTCGCAGGCGTCCGGGCCGTGCAGCTACATC 676 Query 9150 CAGATCTACGACTCCGT-GTGCAAGTGCGTCGCCAGCTCTGGCCACCGCCGTGGCGCGCA 9208 | | | |||| | || |||| || | ||| | ||| ||||| || ||||| Sbjct 675 AACGTGTTCGAC-CAGTCGTGCTCCACGGTGGAGAGCGCGGGCGCACGCCGCGGAGCGCA 617 Query 9209 GATGGGCGTCCTCCGAGTGGACCACCCGGACATCGAGGAGTTCATTCGCGCCAAGCACA 9267 ||||||||| || || | |||||||||||| | ||| ||||| |||||||| || Sbjct 616 GATGGGCGTGCTGCGCATCGACCACCCGGACGTGCTGGACTTCATCACCGCCAAGCGCA 558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203463835204190